Mariniblastus fucicola: MFFC18_04450
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Entry
MFFC18_04450 CDS
T06181
Symbol
rne
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mff
Mariniblastus fucicola
Pathway
mff03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mff00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MFFC18_04450 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mff03019
]
MFFC18_04450 (rne)
03009 Ribosome biogenesis [BR:
mff03009
]
MFFC18_04450 (rne)
Enzymes [BR:
mff01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
MFFC18_04450 (rne)
Messenger RNA biogenesis [BR:
mff03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MFFC18_04450 (rne)
Ribosome biogenesis [BR:
mff03009
]
Prokaryotic type
rRNA processing factors
MFFC18_04450 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Antiterm
Motif
Other DBs
NCBI-ProteinID:
QEG20596
UniProt:
A0A5B9P7M7
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All DBs
Position
568386..569996
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AA seq
536 aa
AA seq
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MKKEMLINALQSEECRIAIVENQRLEELYVERASQDNYVGNVYKGKIVNLEPSIQAVFVD
FGVGRNGFLHISDVEPSYFRQGGYDPDEMMRKEKADRAAQQRNGRSRPPTHGGFRPRVKP
PIQELFQRGDEVLVQVIKEGIGNKGPTLSTYISIPGRYLVLMPALGRVGVSRKIEDEDER
RRLKDCLYDLDPPKGLGFIVRTAGMGRSTKELSRDLAYLLRLWKSIVNRIQNVPAPTDIY
EESDMMIRTIRDTLNGDIDSVIIDCPDAYQRAKDFLKLVMPRMSNKLELYKGKDPMFYHF
KMEKEIAKIHSREVPLPDGGSIVIDQTEALVAIDVNSGSFRTDDSAEETAYRLNMSAARE
IARQLRLRDLGGVIVNDFIDMRREKHRRGVERALRDAMKRDRARTKILRTSPFGLVEMTR
QRIKPGFKRSLYQECPCCNGRGNVKTAESVALDVIRMMLVASEQKNCSTVVIKVHADVAS
YLNNQKRRELSELEGRGSMEIRINGSETVFPEFFEIDCMDENGRTVHLPDRLGAGK
NT seq
1611 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaagaaatgctaatcaatgcgcttcaatctgaagaatgccgcattgcgatcgtt
gaaaaccaaagacttgaagagctctacgtagaacgagccagtcaggataactacgtcgga
aacgtctacaaaggcaagatcgtcaacctcgaaccaagcatccaggcggtgtttgtcgac
tttggcgtgggacgcaacggctttctgcacattagcgatgtcgagcccagctactttcgt
cagggcggctacgatcccgatgaaatgatgcggaaagaaaaagccgatcgtgccgctcaa
cagcgaaacggccgctctcgtccaccgacacacggtggttttcgaccgcgtgtgaagcct
ccgattcaggaactgtttcagcgcggagacgaggttctggtgcaggtcatcaaggaaggc
atcggcaacaaaggcccaacgctttcaacctatatcagcattcctggccgttacctcgtg
ctgatgccggccttgggtcgcgtcggtgtgtcacggaagattgaagacgaagacgaacgt
cgtcggctcaaggattgtctctacgatctggatccgccaaaggggcttgggttcatcgtc
cggactgccggaatggggcgaagcacgaaagagctgtcccgtgacctcgcgtatctgctg
aggctgtggaaatcaattgtcaatcgaatccagaatgtaccggctccgacggatatctac
gaagagagcgatatgatgattcgcacgattcgtgatacgctcaacggcgacattgattcg
gtcattatcgactgcccggatgcgtaccagcgagccaaggatttcctcaagctggtcatg
ccgcggatgtccaacaagctggagctgtacaagggtaaggacccaatgttctaccacttc
aaaatggaaaaggagatcgccaagattcactctcgcgaagtcccacttcctgacggtggt
tcgattgtgatcgatcaaactgaagcactggtggcgatcgacgtcaacagcggaagtttc
cggaccgatgactctgctgaagaaacggcctatcggctgaacatgtcagcggcgcgtgaa
attgcccgccagctgcggctccgcgatcttggtggtgtaatcgtgaacgactttatcgac
atgcgtcgagaaaaacatcgtcgtggagttgaacgggcgttgcgggatgcgatgaagcgt
gaccgcgcgagaaccaagattctgcgcacgtctccgtttggtctggtcgaaatgacgcgt
cagcggatcaagccaggtttcaaacgatctctctatcaggagtgcccgtgttgcaacggt
cgcggcaacgtgaagacagccgagagcgtggctttggatgtcattcgcatgatgctggtc
gcgtcggagcagaaaaactgttccacggttgtgatcaaagttcatgcagatgttgcgtcg
tatttgaacaatcagaaacgccgcgaattgtcagaacttgaaggccgaggttcgatggaa
attcgcatcaacggtagtgagaccgtgtttccggaattctttgagatcgactgcatggac
gagaatggtcgaaccgtgcatttgcccgatcgacttggtgccggcaagtag
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