Mariniblastus fucicola: MFFC18_30210
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Entry
MFFC18_30210 CDS
T06181
Symbol
rtcB_2
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mff
Mariniblastus fucicola
Brite
KEGG Orthology (KO) [BR:
mff00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mff03016
]
MFFC18_30210 (rtcB_2)
Enzymes [BR:
mff01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
MFFC18_30210 (rtcB_2)
Transfer RNA biogenesis [BR:
mff03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
MFFC18_30210 (rtcB_2)
Prokaryotic type
tRNA splicing ligases
MFFC18_30210 (rtcB_2)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
HofP
Motif
Other DBs
NCBI-ProteinID:
QEG23126
UniProt:
A0A5B9PEU2
LinkDB
All DBs
Position
complement(3856618..3858012)
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AA seq
464 aa
AA seq
DB search
MNKKQLVNLGVPKDCVPEAIAAIQTLPRTREGAKKLIPKVVAAPEVYVADPDLGLFAKAL
IEFHENDVPLSSIAYSKWGEDFDEFSIQQIENACKLPVARGAALMPDAHSGYGLPIGGVL
ACENAVIPYGVGVDIACRMKLTITDLDVQTLEQNDPAKCRELDRSLEKGTLFGAGRKWKR
PHDHEVLDEDWTITAITRQVRDKAVGQLGTSGSGNHFVEWGVVTLAEGDFGLEAGTYVGL
LSHSGSRGPGAMTCKRYTDIARQGAPSRIKDDPQLRHLCWLDMDSEAGQEYWAAMNLMGR
FASANHEVIHRYVTKLAGAKSLATIENHHNFAWLEKHDGQDVYVHRKGATPAGEGDLGVI
PGNMADAAFIVRGKGNAKSLNSASHGAGRAMSRTAAKKKFSWGSWRDHLKHKNVRLLAGG
LDEVPGAYKNIHDVMAAQQDLVDVVGQFMPKIVMMCGDGSRAED
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
atgaacaaaaagcagctagttaaccttggcgtcccaaaggattgcgtcccagaagcgatt
gcagcaatccagactttgccgcgtacgcgtgaaggcgccaaaaagttgattccaaaggtc
gttgctgcgccagaagtctatgtcgcggatccggatttgggactgttcgccaaagccctg
atcgaattccacgagaacgacgttccgttgagctcgatcgcttatagcaaatggggcgag
gacttcgacgagttttcaatccagcaaattgagaacgcgtgcaagttgccggtggctcgt
ggtgctgctctgatgccagatgcgcactcaggttacggtctgccaatcggtggtgtgctg
gcttgtgagaacgctgtgattccttacggagtcggagttgatatcgcgtgccgaatgaag
ctgacgatcacagacctcgatgtgcagacgcttgagcaaaatgatccggcgaaatgtcgc
gaactggatcggtcgctcgagaaaggcaccttgtttggagccggtcgaaagtggaagcgt
ccgcacgatcacgaggttctcgacgaggattggacaatcacggcgattacccggcaagtc
cgcgacaaagcggtcgggcagctcggaaccagcggaagcggaaaccatttcgttgagtgg
ggcgtcgtgacgttggccgaaggtgactttggtttggaagccggaacctacgtcggtctg
ctttcgcacagcggtagccgtggtccgggtgccatgacctgcaagcgttacacggacatc
gcgcgacaaggtgctccttcgcgaatcaaggacgatccgcagttgcggcacctttgttgg
ctggacatggattcagaagccggtcaggaatactgggcggcgatgaatttgatgggccgg
ttcgcgtcagcaaaccatgaggtgatccatcgctatgtgacgaagcttgcaggagccaag
tcactggcgacgattgaaaaccatcataatttcgcgtggcttgagaagcacgacggacag
gatgtctacgtgcatcgaaagggtgcaacgccagccggtgaaggtgacctcggagtgatc
ccgggcaacatggctgacgcggcgtttatcgttcgtggaaaggggaacgccaagagtctg
aattcggcttcacatggtgcgggtcgcgcaatgtcgcggacggcagcgaagaagaagttc
agttggggttcatggcgcgatcacttgaagcacaagaacgtgcggttgttggcaggcggt
ttggatgaagttccgggcgcctacaagaacatccacgacgtgatggcggctcagcaggat
ttggtcgacgttgtcggtcagttcatgccgaagatcgtgatgatgtgcggcgacggaagt
cgagccgaagattga
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