Mariniblastus fucicola: MFFC18_39200
Help
Entry
MFFC18_39200 CDS
T06181
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
mff
Mariniblastus fucicola
Pathway
mff03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mff00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MFFC18_39200 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mff03021
]
MFFC18_39200 (rpoB)
03400 DNA repair and recombination proteins [BR:
mff03400
]
MFFC18_39200 (rpoB)
Enzymes [BR:
mff01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MFFC18_39200 (rpoB)
Transcription machinery [BR:
mff03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MFFC18_39200 (rpoB)
DNA repair and recombination proteins [BR:
mff03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MFFC18_39200 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
Peptidase_M23
RnfC_N
Endosulfine
Motif
Other DBs
NCBI-ProteinID:
QEG24014
UniProt:
A0A5B9PCM5
LinkDB
All DBs
Position
complement(4982573..4986313)
Genome browser
AA seq
1246 aa
AA seq
DB search
MATPVERRLRPKSVRKFGSGRDYQLPPDLTKIQTESFRALLQEDVDPEKRKDQGIESVLR
EIFPIQSYDKKLSLSYVRYELGKPRYTPEECRQLRLTYGQPFRVWLRLEKEQPVEEEVFL
GDIPIMMGGGEFIINGAERVVVSQLHRSPGIDFVMASDTTSDRKLASCRVIPERGSWIEV
NVTKKDLMTVRIDQSGKFSALTLLRAMDPKYSEDSDIIRAFYETMKVKVVDGRSAAKLEN
KVAVDDIVYPAGSNKAGEIIVECGRKITKENAELICTAGVKTAEIMDAPKSPLIFNSLID
DATSSHEEALLRIYQRLRPGNPAALEKARTLFNEKFFDSNRYRLGKVGRFRINRKLNLGV
SEKEMTLRPDDILASIKYILELSTPGGDAMVDDIDHLGNRRLRTIDELACDEMRKGFLKL
RRTVQERMSQKEVDDMTPRSLVNPKSVSASIDYFFGRGELSQVVDQTNPLSQLAHERRLS
ALGPGGLNRKRAGFEVRDVHISHYGRICPIETPEGTNIGLISSLAICATVDDYGFLVTPY
TVVTKGKVTDEIRWLRADEESESRVVPCDTPIDGAGGIIPNKSLGGNILARFHADFELTD
PTEVQYMDVAPAQMVGVSASLIPFLEHDDANRALMGSNMQRQAVPLLVAEPPIVGTGMER
HVAVNSSMVIKARRAGKVSFVDATRIEIGNDVYPLKKYVGLNERTCNNQKPLVMPGQKVE
KGEVIADGAATFEGELALGRNVLVGFMSFDGCNFEDAIIISEELVQNDTYTSIHIEEFDV
EVRETKLGREEFTRDIPNVSEKALRNLDESGIVRVGTYVKPGDILVGKVSPKSKTELTPE
EKLLHAIFGRAGEDVKNDSLEVSSGIEGIIIDTQRFSRRMSLSEEERKVFEQDLKAAEAD
GNEAVARVFGNMVEEMEKVLGKTLTDQDDTPLVRNQDPKFIAEKANAFRMQTYVGDISSE
DKVKQLKAIYSEHWPDIEKAIDIRDRKVNSMKRGDELRSGVLQMVKVYIATKRTISVGDK
MAGRHGNKGVISKILPVEDMPFLEDGTPVQIMLNPLGVPSRMNVGQILETHLGWAGSKLG
FQALTPVFDGASEKDINEALAEAGLPAHGKHTLIDGRTGQPCGQETTVGYIYMLKLHHLV
DDKVHARSTGPYSLITQQPLGGKARFGGQRFGEMEVWALEAYGAAYILQELLTVKSDDVE
GRTKIYESMVKGENTLEAGTPASFDVLTNEIRGLALNMQLEKRRGG
NT seq
3741 nt
NT seq
+upstream
nt +downstream
nt
atggcaaccccagtagagcgaaggttacgcccaaaaagtgttcggaagtttggtagcgga
cgcgattaccaattgccgccagatctgaccaagatccagacagaaagcttcagggctttg
cttcaggaggacgtcgatccggaaaagaggaaagatcagggcatcgaaagtgtgctgcgt
gagatttttccgattcaaagctatgacaaaaaactctcgctcagctatgtgcgatacgag
cttgggaagccgcgctatacgccggaagaatgtcgacagttgcgtctgacttacggccag
ccctttcgcgtctggttgcgtcttgaaaaagagcagccggttgaggaggaagttttcctc
ggcgatattccgatcatgatgggtggcggtgagtttatcatcaacggtgcagaacgcgtc
gttgtgagtcagcttcaccgttcgcctggtatcgacttcgtgatggcttcggatacgact
tcggatcgtaagcttgccagctgccgcgtcattcctgagcgtggaagttggatcgaagta
aacgtcaccaagaaagacttgatgaccgtccgtatcgaccagagcgggaagttctctgcg
ttgacattgcttcgcgcgatggatccaaagtacagcgaagattcagacatcatccgtgcg
ttctacgaaacgatgaaagtcaaagtcgtcgacggtcgcagtgcggccaagctggagaac
aaggttgcggttgatgatatcgtctaccccgccggttcgaataaggctggtgagattatc
gtcgagtgcggtcgcaagatcactaaagagaacgctgagctgatttgtactgccggtgtc
aaaactgcagagatcatggacgctccaaaatcgcctctgatcttcaactctttgatcgat
gatgcgacttcttctcacgaagaagcgttgttgcgtatctaccagcgtctccgtccgggt
aaccctgcggcccttgaaaaagctcgaacgttgttcaacgagaagttcttcgattcgaac
cgataccgtcttggtaaggtcggtcgcttccgcatcaaccgtaagctcaatctcggcgtt
agcgaaaaagagatgacgcttcgtccagacgatatcctggcttcaatcaagtacatcctt
gagctttcgactcctggtggtgacgcgatggtcgacgatattgaccacttgggtaatcgc
cgtctgcgaacgatcgatgagctcgcttgtgacgaaatgcgaaagggcttcctgaagctt
cgccgtaccgttcaggagcggatgagccaaaaggaagttgatgacatgacgccgcggagt
cttgtgaatccgaagagtgtttcggcttcaatcgattacttcttcggtcgtggtgagctt
tcgcaggtcgttgaccagacgaatccactgtcacagttggctcacgagcgtcgtctatcg
gctcttggtcctggtggtttgaaccgtaagcgtgcgggcttcgaagttcgtgacgttcac
atttctcactacggtagaatttgtccgattgaaacgccagaaggcacgaatattggtttg
atttccagtctggccatttgtgcgactgtggatgattacgggttcttggtgacgccatat
acggttgttactaaaggtaaagtgactgacgagattcgttggttgcgtgcagacgaagaa
tccgaatctcgcgtcgtgccttgcgatacgccgattgatggcgctggaggaattattccg
aacaagtctcttggcggaaacatccttgctcgttttcatgctgacttcgagttgactgat
ccgacggaagttcagtacatggacgtagctcccgcccagatggttggagtttcggccagc
ttgattccgttccttgagcatgacgatgcgaaccgcgccctgatggggtcgaacatgcaa
cgccaggccgttccgctgttggtggctgagcctccgattgttggtactggtatggagcgt
catgttgcggtcaacagttcgatggtgattaaggcgcgtcgtgccggcaaggtttcgttc
gtggacgcaacgcgaattgaaatcggcaacgatgtttatccgttgaaaaaatacgttggc
ctcaacgaacgaacgtgtaacaaccagaagccattggttatgccaggccagaaggttgaa
aaaggcgaagtgatcgctgacggtgcggcgacgtttgagggcgaattggctctcggtcgc
aacgtgcttgttggtttcatgtcgtttgacggttgcaactttgaagatgcgatcatcatt
agcgaagagctcgttcagaacgatacttacacttcgattcacatcgaagagttcgacgtc
gaagttcgcgaaaccaagctgggtcgtgaagagttcactcgcgatattccaaacgtcagc
gagaaagcacttcgcaatcttgacgaatctggaatcgttcgcgtcggtacttacgtgaag
cctggcgacattcttgtcggtaaggtttcgccgaaatcgaaaactgagctgactccggaa
gagaaacttctccacgcgatctttggtcgtgcgggtgaagacgtgaagaacgattcgctt
gaggtgtcttcgggcattgaaggaatcattatcgacacgcagcgattctctcgccgtatg
agcctgtctgaagaagagcgaaaagtcttcgagcaggatcttaaggccgcggaagctgac
ggcaacgaagccgtggctcgcgtgttcggcaacatggttgaggaaatggaaaaggtcctc
ggcaaaacattgaccgatcaggacgacactcctctggttcgtaaccaggatccaaagttt
atcgctgagaaagcaaacgctttccgcatgcagacttacgttggtgacatcagcagcgaa
gacaaggtcaagcagttgaaggcgatttattcggagcactggccggacatcgagaaagcc
attgatattcgcgatcgcaaggtcaacagcatgaagcgtggcgacgagctccgcagcggc
gtgctgcagatggtcaaggtttacattgcgaccaagcgaacgatttccgttggcgacaaa
atggctggtcgacacggtaacaagggtgtgatctccaagatccttcctgtcgaagacatg
ccgttccttgaagatggaactccggttcagatcatgcttaacccgctgggtgtaccttcg
cgtatgaacgtggggcagatccttgaaactcacctcgggtgggctggttcgaagcttgga
tttcaggcgttgactcctgtcttcgatggtgcatccgagaaagacatcaatgaggcgttg
gctgaagctggcttgccggctcatggaaagcacacgttgatcgacggacgcacgggacag
ccttgcggtcaggaaaccacggttggctacatctacatgttgaagctgcatcacttggtc
gatgacaaggttcacgctcgtagcacaggtccatactcgctcattacgcaacagccactt
ggcggtaaagctcgcttcggcggtcagcgtttcggcgagatggaagtttgggctctcgaa
gcatacggagccgcttacatccttcaggaattgctgacggtgaaatcggacgatgtcgaa
ggccgaaccaaaatctacgaatcgatggtcaagggcgagaacacgctcgaagccggcaca
ccagccagtttcgacgttttgaccaacgagattcgcgggctggcgttgaatatgcagctc
gaaaaacgacgaggcggttaa
DBGET
integrated database retrieval system
