Candidatus Methylacidiphilum fumarolicum: MFUM_0915
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Entry
MFUM_0915 CDS
T09357
Symbol
rpoN
Name
(GenBank) DNA-directed RNA polymerase specialized sigma subunit
KO
K03092
RNA polymerase sigma-54 factor
Organism
mfh
Candidatus Methylacidiphilum fumarolicum
Pathway
mfh02020
Two-component system
mfh02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
mfh00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
MFUM_0915 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
MFUM_0915 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mfh03021
]
MFUM_0915 (rpoN)
Transcription machinery [BR:
mfh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
MFUM_0915 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
LacI
HTH_23
HTH_11
HTH_Tnp_ISL3
HTH_17
HTH_IclR
HTH_3
HTH_Crp_2
MarR_2
HTH_36
Motif
Other DBs
NCBI-ProteinID:
CAI9085290
UniProt:
A0ABM9ICA1
LinkDB
All DBs
Position
MFUM:910196..911581
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AA seq
461 aa
AA seq
DB search
MSTSLGLYQSVKLHQTLSPQMQHSLNILQAPAVELSTLIQQELLANPMLEISEEKPLENP
DALSIDQWIQEEEKWYEYLGSNFEGFQRSVEDEKRRQFFFDSQTASESMTTELSKQLALV
CNDKTLLKAANHIIGNLDEKGYLRAELEEIATDLGMPYSLIEEALSLVQSLDPPGIAARN
LSECLLLQLKAQGKENSLEFRIVKECLPLLERKKFNEIAKQLKVSLKQVQEAVATIRSLE
PFPGSKFGNDEKEKIILVDLIIVREGESWKVYFNEELMPRLRLNHYYKNLLSDKDKDPSL
KNYLKEKMRSGLFLIKCLRMRENTLLRVAEAIVESQQEFFQHGPGFLKPLTMSEVAKKTG
VHETTVSRAIANKYVQTPYGIFELKYFFNSGFQKTTGEFVANQTIKESIERLIRNEDPQA
PLSDQQIVEALAKMGIKMARRTIAKYRTHLKILPSHLRRKS
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
gtgtcaacatctttaggtctatatcaatctgttaagttgcatcagacattgtcgccacag
atgcaacattctttgaacatattgcaggcacctgcagtagaactctctactcttatccaa
caagagttgcttgccaatccgatgcttgaaatttcagaagaaaagcctttagaaaatcct
gatgcattgtcgattgatcagtggattcaggaagaggaaaaatggtacgaatatctaggt
tcaaatttcgaaggattccaacgttcggtagaagatgaaaaaagacgtcagttttttttc
gattcacagaccgcttcagaatccatgactaccgaattatcgaagcaacttgctctagtt
tgtaatgataaaacccttttaaaagcagccaaccatattattggcaatttggatgaaaaa
ggttatttgagagcagaattagaagaaatagcgactgatttaggaatgccatatagtcta
attgaagaagccttatctttagtccaatctttggatccacctggtatagctgctagaaac
ctctccgaatgtcttttattgcaactaaaagctcaagggaaggaaaattccttggagttc
cgtattgttaaagaatgtttgccgcttttagaaaggaaaaaatttaatgaaattgccaaa
cagctaaaagtaagtcttaaacaagttcaagaagcggtggctacgattcgctccctagaa
ccttttcctggttcaaagtttgggaatgatgaaaaagaaaagattattcttgtagacctt
attatagtgagggaaggagaaagctggaaggtatacttcaatgaggaattgatgcctcgg
ttacgattgaatcattattataaaaacttgttgagtgataaagacaaagatcccagcttg
aaaaattatttgaaggaaaaaatgcgttccggtctcttcttgatcaaatgtttaaggatg
cgggaaaatactcttttaagggtagccgaagcaatcgtagagagtcagcaggagtttttt
caacatgggcctggatttttgaagccattgacaatgagtgaagttgcaaaaaaaactggt
gtccatgaaacaacagttagccgcgcgattgctaacaaatatgttcagaccccttatgga
atatttgagcttaaatatttctttaattctggatttcaaaaaacaactggtgagtttgtc
gcaaatcagaccattaaagaatcgatcgaaagacttattcgcaacgaggatcctcaggcc
ccgttgtctgatcaacagatcgttgaggctctagcaaagatgggaataaaaatggccaga
agaactatcgcaaaatataggactcatttgaaaatcttgcccagtcatttaagacgaaaa
agctaa
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