Candidatus Methylacidiphilum fumarolicum: MFUM_1104
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Entry
MFUM_1104 CDS
T09357
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
mfh
Candidatus Methylacidiphilum fumarolicum
Pathway
mfh03030
DNA replication
mfh03430
Mismatch repair
mfh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mfh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MFUM_1104 (dnaE)
03430 Mismatch repair
MFUM_1104 (dnaE)
03440 Homologous recombination
MFUM_1104 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mfh03032
]
MFUM_1104 (dnaE)
03400 DNA repair and recombination proteins [BR:
mfh03400
]
MFUM_1104 (dnaE)
Enzymes [BR:
mfh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
MFUM_1104 (dnaE)
DNA replication proteins [BR:
mfh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
MFUM_1104 (dnaE)
DNA repair and recombination proteins [BR:
mfh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
MFUM_1104 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
HHH_3
DUF447_C
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
CAI9085471
UniProt:
A0ABN8XGF0
LinkDB
All DBs
Position
MFUM:complement(1092020..1095505)
Genome browser
AA seq
1161 aa
AA seq
DB search
MSDGFVHLHLHSEYSLLDASARIKDIVNKAKQLGMPAVALTDHGNLYGTIEFYKACIQEN
IKPIIGCEAYITAGSRFDRKGSREKIYHITLLAKNQQGYKNLLRLISLSHLEGFYYKPRI
DRALLKECGQGIIGTSGCMNGEIPQKILEEDIKAAKNLVEEYSRLFEPDCFYLEIQNHGL
KEEATIREVLADFSKSLGLPLVATNDVHYIEQEDSQFHDVLLCIGTASQINDSKRKKYPC
AEFYFKSLQQMEELFKEYPQALENTLTIANQCDVTIELGKNRFPAYHPPAPYSQKEYLKK
LCYEGLEKRFGDRNLEEKEKIKERLDYELSVIEKTGFSSYFLIVWDFIHYAKKEGIPVGP
GRGSAAGSLTAYVLEITDIDPLKYGLVFERFLNPQRVSPPDIDIDFCYNRRSEVIDYVRK
KYGERSVAQIITFGTMGAKMAVRDVARVLGLSYQEADRIAKMIPTDSSMTIEKAKELNPL
LQQLYAHDPQCQEVLNIASKLEGLTRQAGVHAAGVVISDGDLLDFVPLSRGDHEEIVTQW
SMEPISEIGLLKMDFLGLKTLTVISECLELIKKCGENQTLDPNRFPLDDKKTYELLGLGW
TIGVFQLESPGMVELAKKLKPGNIEDIIALVALYRPGPMENIPAYAERKLGKVPITYDHP
LLEPILKDTYGVMIYQEQVMQAASVLAGYSLGESDLLRRAMGKKKPEEMRKHRSLFVKGC
KEKNNIPEEKANQIFETLEKFAGYGFNKAHSACYGYLAYVTAYLKANFPVFYLCTLLSNE
LGDTEKISQLVSECRRMGIAVLPPDILKSEVRFSVENGAIRWGLSAIKNVGESVAEAIVR
ARKKHGDFTSLYDLCAHLDCPLNKKFLESLIKSGACDSLRKSRKELLESLGEAMAAGNKT
SKERLSGQQSLFEETKENNPNASGIAEEYPLNLRLQWEKELLGIYLSGHPIDEWIPLIKL
FQQIPISQLQELADNTRLYIPGIITQIERKTSQKSKKPYVKLMLEDQTGHIEVILFSDTF
QSTPSSEWGAKAFIVDGQINKKEEIVSIRSSHLFTIEEAIEHLKPMLYLTITEENWTPNH
WKKLHDILLKHPGNAPVVLRYLTKELVCEITTGETFKVNVFPSHLPSLLQELTALLPQDS
LKLKFNKSPHDHSKQRSLHYS
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
atgagtgatggctttgttcatctccatctccattcagaatacagtcttcttgatgcatcc
gctcgaatcaaagacatcgtcaacaaagctaaacagttgggcatgccagcggtagcgctc
actgatcatggaaatctttacgggacgatcgaattttacaaagcttgcattcaagaaaac
atcaaacccatcatcggctgtgaagcttatataactgctggaagccgatttgaccgcaaa
ggcagcagagagaaaatctaccatattactcttttagctaagaatcaacaaggatataag
aatcttttaagacttatttccttatctcatctagaaggattctattacaaacccagaatc
gatcgggctctgcttaaagaatgtggccaagggattattggtacgagtggctgcatgaat
ggggagattccacaaaagattttggaagaagatatcaaagcagctaaaaaccttgtcgaa
gagtatagccgtctatttgagcccgattgtttttatttagaaatacaaaaccatggctta
aaagaagaagctacaataagagaagtgctcgctgatttttctaagagtttgggactgcct
ttggttgctactaatgatgtccactacatcgagcaagaagactcacaattccatgatgtt
ttactctgtattggaacagccagccagatcaatgatagtaaaagaaagaaatacccttgc
gctgaattttacttcaaatcccttcaacaaatggaagagctttttaaggaatatcctcaa
gcactagaaaacactttgaccatagccaatcaatgtgatgttaccattgagttaggtaaa
aaccggtttcctgcctatcatcctcctgctccctatagtcaaaaagaatatttaaaaaag
ctctgttatgaaggcttagaaaaaagatttggcgacaggaacttagaggaaaaggagaaa
ataaaagaaagattggattatgaactgtccgtaatagaaaagacaggtttttcgagttat
tttttaatagtatgggattttatccattatgccaaaaaagaaggcattcctgtaggtcca
gggagaggcagtgcagcaggtagcctaacagcctatgtcctagaaatcactgatattgac
cctttaaagtatggattggtctttgaaagatttctcaatccacaaagggtttcgcctcct
gatattgacatcgatttttgttataaccgccgttcagaggttattgattatgtcaggaaa
aaatatggggagagatctgtcgcccaaattattacttttgggacgatgggagcaaagatg
gcggtaagagatgttgctagagtgctgggcctaagctatcaagaagcggatcgtattgcc
aagatgatcccaactgactcgtcaatgaccatagagaaagccaaagaacttaatccgctc
cttcaacaactctatgctcatgatccacaatgccaagaagttcttaatatcgcctccaaa
ctggaaggattaactagacaggccggagtgcatgcagctggggttgttatttctgatgga
gatttgctcgattttgtccctctttctcgcggagatcatgaggaaatagtgactcaatgg
tccatggaacctatttcagaaatcggactgctgaaaatggatttcttagggctaaaaacg
ctaactgtcatttctgaatgtttggagcttataaaaaaatgcggggaaaatcaaactctt
gacccaaatcgttttccccttgatgacaagaaaacatacgagcttttgggccttggatgg
accataggtgtatttcagctggaatcaccaggtatggttgagctagctaaaaaacttaaa
ccaggaaatatcgaagatatcatagctctagtagccctttatagaccaggaccaatggaa
aatattcctgcgtatgctgagagaaagttaggcaaggtgcctataacctatgatcatcct
cttttagaaccgattctaaaggatacgtacggggttatgatctatcaggaacaagtcatg
caagcggctagcgtgttggccggttattctctaggagaatcagatcttctgagaagagcc
atgggtaaaaaaaagcctgaagaaatgcgaaagcaccgaagcctatttgtaaaaggatgt
aaggaaaaaaacaacattcctgaagaaaaggcgaaccagattttcgaaacgctggaaaag
tttgctggttatggttttaataaagctcatagcgcctgttatggttatttggcttatgtt
actgcttatctcaaagcaaacttccctgtattttacctttgcacgcttttatctaacgag
ttaggagacaccgaaaaaatctcccaacttgtttccgaatgcagacgaatgggtatagcc
gttttaccccccgatattctcaaaagcgaggtacgcttttcagtagaaaatggagcgatc
cgctggggactttcagcaattaaaaacgtaggagagtctgttgctgaagcaatagtacga
gcaaggaaaaaacatggcgattttacttccctgtatgacctgtgtgcgcatcttgactgt
ccattaaataaaaagttcttagaaagtctgattaaatcgggtgcttgtgatagccttaga
aaaagtagaaaagaattgcttgagagtcttggagaggcaatggctgcgggaaacaaaact
tccaaagaaaggttaagtggccaacagagtctttttgaagaaaccaaagagaataatcct
aatgcttctggaatagccgaagagtatccactgaaccttcggctccaatgggaaaaggaa
ctattaggaatctatttaagtggtcatccaattgatgaatggattcctctgatcaagtta
ttccaacaaatcccaatttcccagcttcaagagctggctgataatactcggctttacatc
cctggaattatcactcaaattgagagaaagacttcccaaaaatccaaaaaaccctacgtg
aagcttatgctcgaagatcagactggacatatcgaagtcattcttttttccgacacattt
caatcgactccttccagtgaatggggagcaaaggcttttattgtagatggtcagataaat
aaaaaagaagaaattgtttcgattcgatcttcacatctttttaccatagaagaagctatt
gagcacttaaaacccatgctttatttgaccattactgaagaaaactggaccccaaaccac
tggaagaagctgcacgatattcttttaaagcatccaggcaatgctcctgttgtattaagg
tatctaacaaaagaactcgtatgcgaaatcaccaccggcgaaacctttaaggtaaatgtt
tttccttctcatctgccttcccttttgcaggagttaactgctctgctccctcaagactcc
ttaaaactgaaatttaataaatctccccacgaccattctaagcaaagatcacttcactac
tcatga
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