Candidatus Methylacidiphilum fumarolicum: MFUM_1478
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Entry
MFUM_1478 CDS
T09357
Symbol
udgB
Name
(GenBank) Type-5 uracil-DNA glycosylase
KO
K21929
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
mfh
Candidatus Methylacidiphilum fumarolicum
Pathway
mfh03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
mfh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
MFUM_1478 (udgB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mfh03400
]
MFUM_1478 (udgB)
Enzymes [BR:
mfh01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
MFUM_1478 (udgB)
DNA repair and recombination proteins [BR:
mfh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
MFUM_1478 (udgB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UDG
Motif
Other DBs
NCBI-ProteinID:
CAI9085820
LinkDB
All DBs
Position
MFUM:complement(1432720..1433427)
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AA seq
235 aa
AA seq
DB search
MHPKDRALSDLEERVVACRLCPRLVAWREEISKHKPKRFAKETYWSKPVPGFGDSSAKLL
IVGLAPAAHGGNRTGRIFTGDRSGDFLFDALYRFGYSNSPLSIGKNDSLVLNKVYITATV
RCAPPNNKPLLEEIINCRPYLIEELNILKNIHVILALGRIAFDGIFKTLKIMAKEKGELF
PVKKPSFSHGIELTLPDGKILVASFHPSQQNTFTGRLTKSMFDAVLKRIDQLLNS
NT seq
708 nt
NT seq
+upstream
nt +downstream
nt
atgcatccaaaagatcgagcactttccgatctagaagaaagagtggttgcttgccgtctc
tgtccgaggcttgtagcctggagggaagaaatatcaaagcataaaccaaaaagatttgcc
aaagaaacttattggtccaaacccgttcctggatttggagatagttctgccaagctactc
attgttgggcttgcaccagcagctcatgggggaaaccgtactggtagaatctttacgggc
gaccggagcggagattttctgttcgatgccctctaccgctttggctattccaacagtcca
ttatctattggaaaaaacgattctttggtccttaataaagtctacattacggctacggtt
cggtgtgcgcctcctaataataaaccgcttttagaagaaattatcaattgcagaccgtat
ttgatagaagaattaaacattctaaaaaacatccatgtcattttggctttgggccgcatt
gcctttgatggtatctttaaaacacttaaaattatggccaaagaaaaaggagaacttttt
ccagtcaaaaagccctcctttagccatggaatcgaactaaccctcccggatggcaaaatt
cttgtggcttcctttcatccaagccaacaaaacacctttacaggtagactcaccaagagc
atgttcgatgctgttttaaagcggattgatcaacttttaaatagctag
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