Candidatus Methylacidiphilum fumarolicum: MFUM_2150
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Entry
MFUM_2150 CDS
T09357
Symbol
rtcB
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mfh
Candidatus Methylacidiphilum fumarolicum
Brite
KEGG Orthology (KO) [BR:
mfh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mfh03016
]
MFUM_2150 (rtcB)
Enzymes [BR:
mfh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
MFUM_2150 (rtcB)
Transfer RNA biogenesis [BR:
mfh03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
MFUM_2150 (rtcB)
Prokaryotic type
tRNA splicing ligases
MFUM_2150 (rtcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
CAI9086462
UniProt:
A0ABN8XGX6
LinkDB
All DBs
Position
MFUM:2105954..2107384
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AA seq
476 aa
AA seq
DB search
MEMSLLEKISESCWQIPAHGTMRVPVIIYGSEKIIQQMDQKVAEQASNVASLPGIVKASF
VMPDAHWGYGFPIGGVAAFDPDQDGVISAGGVGFDISCGVRTLLTGLQEKDIEPIKNKLA
DLLFKEIPAGVGSHGKIHLDKNEMDKMLVGGAKWAIEQGYGKEEDLQRIEEGGCMPGADP
QAVSNLAKERQAKEMGTLGSGNHYAEVQVVGKIFDEAIAKLLSIHEGDIVVSIHCGSRGL
GHQIGTDYLKEMVVCAQKLKIELPERELACAPIQSDLGKRYLGAMRAGINCALANRQILT
HLIRKVFSYFFPNIFMPLLYDVSHNTCKVEEHSINGGSKKLFVHRKGATRAFGPGHHEIP
EDLKEAGQPVLIGGSMGTHSYILVGTTQSERLAFSSAVHGAGRAMSRSKALKEWKGKEII
KSLEAKGILIRAVSERGVAEEAPLAYKDVSDVVEAAHKAELAKLIARLDPLICIKG
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atggaaatgtccttgcttgaaaaaatttcagagagctgttggcagattcctgctcatggg
acaatgagggttccagtgattatttatggatctgaaaaaataatccaacaaatggatcaa
aaagttgccgaacaggcttccaacgttgcctctttacctggaattgttaaagcatctttt
gtaatgcctgatgctcattggggatatggatttccgataggaggcgttgcagctttcgat
cccgatcaagatggagtgatatcggcaggaggcgttggatttgatatctcctgtggagtc
agaacccttttaacaggattgcaagaaaaagacatcgagccaatcaaaaataaacttgcc
gatcttctattcaaagaaattccagcaggagtggggagtcatggaaagattcacttggat
aagaacgaaatggataagatgcttgtcggtggtgcaaaatgggctatagaacaaggctat
ggaaaagaggaggatcttcagagaattgaagaagggggatgtatgcctggagctgatcct
caagccgtttccaatcttgcaaaagaacggcaagcaaaagaaatgggcacgttgggatca
gggaaccattatgcggaggtacaagttgttggcaaaatttttgatgaggcaatagccaaa
ctactttccatccatgaaggagatatcgtagtgagtattcattgtggatcaagaggctta
ggacatcaaattgggacggattatttaaaggagatggtagtttgtgcgcaaaaactcaag
attgaattacccgaaagagaactcgcctgtgctccgatccaatcggatcttgggaagagg
tatcttggagcgatgcgagcaggaattaattgtgcgttggctaacaggcagatcctcacg
catttgattagaaaagtattttcctatttctttccaaatattttcatgcctctgctctat
gatgtctctcacaatacctgcaaagtcgaggagcattcgattaatggaggctcaaaaaaa
ctttttgtgcatcgaaaaggagccactcgtgcttttggtccaggacaccacgaaattcct
gaagatctgaaagaggctggtcaaccagtccttataggtggcagcatgggtacccattcc
tatatcttggttggtacaactcaaagcgaacggcttgctttttcttctgcagtacatgga
gctgggagagccatgagcagatctaaggctttgaaagagtggaaaggcaaagagatcatt
aaaagccttgaagcaaaaggcattctgattcgagctgtttcagagcgcggtgttgctgaa
gaagcccccttagcctataaggatgtcagtgatgtcgtagaagcggcacataaagcagag
cttgcaaaactgatcgccagactcgatcccttaatttgtatcaaaggctga
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