Methanobacterium formicicum DSM1535: DSM1535_0169
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Entry
DSM1535_0169 CDS
T03743
Name
(GenBank) DNA double-strand break repair rad50 ATPase
KO
K03546
DNA repair protein SbcC/Rad50
Organism
mfi
Methanobacterium formicicum DSM1535
Brite
KEGG Orthology (KO) [BR:
mfi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mfi03400
]
DSM1535_0169
DNA repair and recombination proteins [BR:
mfi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
DSM1535_0169
Archaeal homologous recombinant proteins
DSM1535_0169
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMC_N
AAA_15
AAA_23
AAA_21
AAA_27
SbcC_Walker_B
AAA_29
Rad50_zn_hook
MukB
Filament
APG6_N
Sec3_CC
AAA_19
KNOX2
ABC_tran
DUF4349
Motif
Other DBs
NCBI-ProteinID:
CEA12534
UniProt:
A0A090I147
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All DBs
Position
1:169395..172094
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AA seq
899 aa
AA seq
DB search
MIIESLHMTNFKSHRDTRIEFDTGISIIIGGNGAGKSSILEAVSFALFKQYTSKKIEHLI
TTGQKRMSVEIQFTAHGRSYRVLRERTKTASKAIMKIKEGDRFQPLISGDKQVTQEVQNL
LEMDGDLFLNAVYVRQGEIADLVEKTASEKKQMIGRLLGIDSLEKAWKNMKIILDKYSEQ
KIRLEGKIESFKDLKEGFKVKKEKEKELTQKIKQINLKREENIIESNLLRDKKEILDKRN
VEFENTTTLQESKKDFLHQLEKTQNDLEKQLNDITVKEEEIDRIKPQLKKLDVLKSLDDA
LKDLKHLKKDKESLNKTLNDIKHFENVLDENEQYYNDYSLLDDEINNLQYARDQFEGSRV
LIDQYHERKSKIEIKLKKSLEKVRDVLEKSNQVLGTSFDSVESFEKHLSQFKPQLEAQIS
EASEAIQDIKRELSNLQVKNENLEKPIKELELVKDQCPICKSDITPQKREELIGDYNLEI
DNNQSLAADLGVKLKALENEKKVLDFQQSKIQSINLGILKEYLKSADHDQEEINNIDSSI
QELQKKVVVLENIERDIKGKKSDLASIKANYEKYLGARGSLESLGDYEEQSLKLEDVNTG
VRDLKNRISALMEIARDSVEDLPGEIAYLEKQAQTYQHLLGEVSQKDSLNSRIQENQNLI
RETREELDNIKNKITSLNYNKENHERVKREWELKNAELMELNGQKQLSVGELNQLSRSLQ
EIEDKLNSLKGYEKELKNLKDFLKLLNLIRDLFSKDGVQKDLRNVSRPLIEEKTRELFEK
FNFEYSDVRLDEDYDVTIYGPSGESNLDMISGGEKIAVALALRLGITQVLSGGSLELIML
DEPTIHLDAYRRQELIDLLKKMSIIPQMIIVTHDADLEDAADNIMKIEKEEGISFLVES
NT seq
2700 nt
NT seq
+upstream
nt +downstream
nt
atgatcattgaaagcctccatatgacgaactttaaatctcaccgtgatacccgtattgaa
tttgacaccgggatatccataataataggtggaaatggtgcaggtaagtccagtatactg
gaagcagtgagctttgcactctttaaacagtacaccagtaaaaaaattgaacatctcata
accaccggccagaagaggatgtcagttgagatccagttcacggcccacggccgaagctac
cgggtactgcgggaacggacaaaaactgcctccaaggctatcatgaagataaaagaaggc
gataggttccaacctctgatttctggggataaacaggtcacccaggaagttcaaaaccta
ttagagatggacggggacttgttcctcaatgcagtctatgtgcggcagggtgaaatagcc
gatctggttgaaaaaacagcatcagaaaagaaacagatgattggaaggcttcttgggatt
gattccctggaaaaagcctggaaaaatatgaaaatcattctggacaagtacagtgaacag
aagattagactggaaggtaagatagaatctttcaaagatttaaaagaaggattcaaggta
aaaaaggaaaaagaaaaggaattaacccagaaaattaaacagatcaaccttaaacgagag
gaaaatatcattgagtccaacctgctccgggataagaaggaaattctggataagagaaat
gtggaatttgaaaacaccaccaccctccaggaatccaaaaaagacttccttcatcagctg
gaaaaaactcaaaatgaccttgaaaagcagttaaatgatattacagttaaagaagaagaa
attgatcgcataaaacctcagttgaagaagttggatgttttgaaaagtctggatgatgca
cttaaagaccttaaacacttaaaaaaggataaagaaagtcttaataaaaccttgaatgat
attaaacattttgaaaatgttttagatgaaaatgagcagtattacaatgattattctctt
ttagatgatgaaattaataatttgcagtatgcacgggaccagtttgagggaagcagagtc
cttattgaccagtaccatgaaaggaagtctaaaattgagattaaacttaaaaaatccctg
gaaaaagtgagggatgttcttgaaaaatctaaccaagtcctgggtacaagttttgactcg
gtggaatcctttgaaaagcacctatcccagtttaaaccccagctggaggcacagatttct
gaggcctcggaggctattcaggacattaaaagagagttatccaatctccaggttaaaaat
gagaacctggaaaagcccattaaagaattggaactggttaaagatcagtgccctatctgc
aaatcagatataaccccccagaagagggaagaacttataggtgactataatttagaaata
gacaataatcaatcactggctgcagatttgggagttaaattgaaggcccttgaaaatgaa
aagaaggttctggatttccagcagtcaaaaatccagagtataaatttgggaatactgaaa
gaatacttaaaatccgcagatcacgaccaggaagagatcaacaatattgactccagtatc
caggaactgcagaagaaggtagttgttctggagaacattgaacgggatataaagggcaaa
aaatcagacctggcatccattaaggcaaattatgagaaatatctcggtgctcgtggttct
ttagagtcacttggagattacgaggaacaatcgcttaagttagaagatgttaacaccggg
gtacgcgatttaaaaaacaggatcagtgcccttatggaaattgccagggacagtgtggaa
gatctcccgggagaaatagcttatctggaaaaacaggcccagacatatcaacatttgttg
ggtgaggtcagccagaaagattccctcaactcacggattcaggaaaatcagaaccttatt
cgggaaacccgtgaagagttggataatattaaaaacaaaattaccagtttaaactacaat
aaagaaaatcatgaacgggttaaaagggaatgggagctgaaaaacgcagaattaatggaa
ctcaatggccagaaacagttaagtgtaggggaactcaaccagctatcccgctccctccag
gaaatagaggataaattgaattcccttaaagggtatgaaaaggaattaaagaaccttaag
gactttttaaaactgctgaatctcattcgggatcttttcagtaaagatggagttcagaag
gatttgagaaacgtttcccggccacttatagaggaaaagacaagagagttattcgaaaaa
ttcaacttcgagtactctgatgtgcggctggatgaagattacgatgtaaccatctacggc
cccagtggggaaagcaacctggacatgatcagcggaggggaaaagatagccgtggccctt
gccctgcggttggggataactcaggtactttctggagggagtttagagcttatcatgctg
gatgaacccaccattcacctggatgcctaccggagacaggaactgattgatcttttgaaa
aaaatgtccatcataccccagatgatcattgtcacccacgatgcagatctggaggatgcc
gctgataacatcatgaagatcgaaaaagaggaagggatatctttcctggtggaatcctaa
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