Methanobacterium formicicum DSM1535: DSM1535_1565
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Entry
DSM1535_1565 CDS
T03743
Name
(GenBank) xylose isomerase domain-containing protein
KO
K01151
deoxyribonuclease IV [EC:
3.1.21.2
]
Organism
mfi
Methanobacterium formicicum DSM1535
Pathway
mfi03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
mfi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
DSM1535_1565
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mfi03400
]
DSM1535_1565
Enzymes [BR:
mfi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.21 Endodeoxyribonucleases producing 5'-phosphomonoesters
3.1.21.2 deoxyribonuclease IV
DSM1535_1565
DNA repair and recombination proteins [BR:
mfi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
DSM1535_1565
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
AP_endonuc_2
UvdE
Motif
Other DBs
NCBI-ProteinID:
CEA13897
UniProt:
A0A090I9A1
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All DBs
Position
1:1564226..1565089
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AA seq
287 aa
AA seq
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MKNRINFGPAGNPLGFNGQTVDVCDYIRGLGLDAYEYQATYGVKIQKPSGLKLGENARNN
RVKISMHGPYYINLSAQKDDVLERSIERLIQSARAAEWMDAYRIVFHPGFYTKYTPQEAL
QRCKGAINDLLEKLDSLGIKKFTFAPETTGKRSQLGSLDEIIEICRSFPHFAPTIDFAHV
HARGRGCVKGADEYHRILSKLEDELGAMVKNPETLHCHFTRIEYTDAGERKHHVLQEMEY
GPPLEPLLEVLVDGGWNATIICETPFLEKDALLMKAVHEKILEKKGV
NT seq
864 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaacaggataaatttcggcccggcaggcaatcccctgggatttaacggtcaaacc
gtagatgtctgtgattacatccgtggcctgggcttagatgcctatgaatatcaggccacc
tacggggtgaagattcagaaaccatccggtcttaaactgggtgaaaatgcccgaaataac
cgtgtgaagatttccatgcacggcccctattacatcaacctatcggcgcaaaaggatgat
gtcttggaaagatccattgaacggttgattcagtcagcccgggcagcagagtggatggat
gcttatcgtattgttttccatccgggattttacacaaaatacacgccccaggaggcattg
cagcgatgcaagggggccattaatgatcttttggagaaactggattccctgggaataaaa
aaattcacctttgcaccggaaaccactggaaaaaggtctcaactgggtagtctggatgaa
atcattgaaatttgccggtccttcccccactttgctcccaccatagactttgcccatgta
catgccaggggaaggggttgtgtgaagggagctgatgaataccaccggatactgagtaaa
ttagaggatgaactgggggcaatggtaaaaaacccggaaacactccactgtcacttcacc
aggattgaatacactgatgctggtgaaagaaaacaccatgttctccaggaaatggaatac
ggccctccattagagccattactggaagtactggtggatggaggatggaacgccaccatc
atatgtgaaactccctttttggaaaaagacgcacttttgatgaaggccgtccatgaaaaa
atcctggaaaagaagggtgtttaa
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