Methanobacterium formicicum DSM1535: DSM1535_2374
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Entry
DSM1535_2374 CDS
T03743
Name
(GenBank) putative exosome complex exonuclease 2
KO
K12589
exosome complex component RRP42
Organism
mfi
Methanobacterium formicicum DSM1535
Pathway
mfi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mfi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DSM1535_2374
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mfi03019
]
DSM1535_2374
Messenger RNA biogenesis [BR:
mfi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
DSM1535_2374
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
DSM1535_2374
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-ProteinID:
CEA14791
UniProt:
A0A090I552
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All DBs
Position
1:complement(2394091..2394897)
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AA seq
268 aa
AA seq
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MVQSVVPEIIKESVANLIRSGERADGRALDQYREVSLETGVIKKAEGSARVKIGKTQIVV
GAKPQIGEPFPDTPNVGVLITNSELNPMAAPNFEAGPPNETSVELSRVTDRCIREGKVVD
LEKLTIIPGKKVWMIFLDLHIIDYDGNLMDAAVLGSLAALMDAKIPSTTIDGDEVVIDYE
QMVPLPIKEQPLMCTLAKIGGELVVDPSLEEDDVLDARISVGVRADGSICAMQKGGSVPL
TREEVLKAVGIAQKKTEELRENVSKLTK
NT seq
807 nt
NT seq
+upstream
nt +downstream
nt
atggtacagagcgtagtccccgagataataaaagaaagtgtggccaacctcatccgaagt
ggtgaaagagcagatggaagggccctggaccaataccgggaagtaagcctggaaaccggt
gtaataaaaaaggcagaaggttccgcccgggtgaaaataggaaaaacccagatagtagtg
ggtgccaaaccacagatcggcgaaccattccctgacacacccaacgtgggtgtcttaata
actaactctgaacttaatcccatggctgcccctaactttgaagcaggacctcccaatgaa
acttcagtggagctttccagggtaactgaccgttgtataagggaaggaaaagtggtggac
ctggaaaaattaaccatcatacctggtaaaaaggtgtggatgatattcctggacctgcac
atcatagactacgatggcaacctcatggatgccgctgttctgggcagtctcgctgcccta
atggatgccaagatacccagcaccaccatagatggtgatgaagtggtcattgactacgaa
cagatggtacccctccccattaaagaacaacccctcatgtgcaccctggccaagatcggg
ggagaactggtggttgacccttcactggaagaggatgatgtcctggacgcccggatatcc
gtaggtgtgcgggccgatggcagcatatgtgccatgcaaaaaggtggatcagtacccctc
acccgtgaagaagtcttaaaagcagtgggaatagctcaaaagaagacagaagaacttcgt
gagaatgtttccaaactaactaaataa
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