Methanobacterium formicicum DSM1535: DSM1535_2375
Help
Entry
DSM1535_2375 CDS
T03743
Name
(GenBank) putative exosome complex exonuclease 1
KO
K11600
exosome complex component RRP41
Organism
mfi
Methanobacterium formicicum DSM1535
Pathway
mfi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mfi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DSM1535_2375
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mfi03019
]
DSM1535_2375
Messenger RNA biogenesis [BR:
mfi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
DSM1535_2375
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
DSM1535_2375
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-ProteinID:
CEA14792
UniProt:
A0A090I5G4
LinkDB
All DBs
Position
1:complement(2394899..2395651)
Genome browser
AA seq
250 aa
AA seq
DB search
MIIILTSKSIGDSNKGSLVASDTKKRPDGRAFDELRPLKIEAGVLERADGSAYVEIGDNK
VLAAVYGPRELHVRRLLKPNMAILRCRYNMAPFSVEDRKRPGPDRRSVEISKITAEALNP
AVFLEKFPRSTIDIFIEVLQAEGGTRCAGITAASVALADAGIPMRDMVAACAAGKADGQV
VMDLSEWEDKEGEADLPIAMMPRTGDITLLQMDGHLTSDEFEQALDLAIEGCKIISEAQK
EAIKNRYGGD
NT seq
753 nt
NT seq
+upstream
nt +downstream
nt
gtgattattattctaaccagcaaatcaattggagatagtaacaaaggaagtttagtagct
tctgatactaaaaaaaggcccgatgggagagcctttgatgaactgaggcctttgaaaata
gaggccggtgtactggaaagagctgatggatcagcctatgtggaaattggcgataacaaa
gtattagccgcagtctacggtccacgagaattacacgtccgccgactgttaaaacccaac
atggccatactgcgttgccgttacaacatggcccccttctcagtggaagaccgtaaaaga
cccgggcccgaccgcagatcagtggaaatatccaagatcactgccgaagcacttaaccct
gcagtcttcctggaaaaattccccagatccaccattgacatattcatagaagttctgcag
gcagaaggaggcacaaggtgtgccggtatcactgcagcatcagtggccctggccgatgcc
ggtatccccatgagggacatggtagccgcctgtgccgcaggtaaagccgatggccaggta
gtaatggatctctcagaatgggaagataaggaaggagaagcagatctgcccatagccatg
atgccccgtaccggggacataaccctgctacagatggatggacacctgacctctgatgag
tttgaacaggcactggatctggccattgaaggatgtaaaatcatcagtgaagcacaaaaa
gaggccataaagaacagatacggtggtgattaa
DBGET
integrated database retrieval system
