KEGG   Methanofollis formosanus: E2N92_09520
Entry
E2N92_09520       CDS       T09788                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
mfk  Methanofollis formosanus
Pathway
mfk03030  DNA replication
mfk03410  Base excision repair
mfk03420  Nucleotide excision repair
mfk03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:mfk00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    E2N92_09520
   03410 Base excision repair
    E2N92_09520
   03420 Nucleotide excision repair
    E2N92_09520
   03430 Mismatch repair
    E2N92_09520
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mfk03032]
    E2N92_09520
   03400 DNA repair and recombination proteins [BR:mfk03400]
    E2N92_09520
Enzymes [BR:mfk01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     E2N92_09520
    6.5.1.6  DNA ligase (ATP or NAD+)
     E2N92_09520
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     E2N92_09520
DNA replication proteins [BR:mfk03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    E2N92_09520
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     E2N92_09520
DNA repair and recombination proteins [BR:mfk03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     E2N92_09520
   NER (nucleotide excision repair)
    Other NER factors
     E2N92_09520
   MMR (mismatch excision repair)
    Other MMR factors
     E2N92_09520
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-ProteinID: QYZ79652
UniProt: A0A8G1EH69
LinkDB
Position
2099485..2101125
AA seq 546 aa
MEFAAFSRVCEQLEGLSGRLEMIDLIASVLPTLPDEELPIFVRFVMGRVFPDWSPQKLGI
GPNLLYEAIGYVAGRKKAEVVAAVNETGDVGCAVEQLLATKSQTSFFVEPLSLAGVYADF
TRIARTDGSRSQREKLKIIKGLLGNAGALEGRYLSRLLLEELRIGVGEGNVRDAIAGAFD
VDAALVAHAHQALNDLGEVALLARTGAAALQDVHIAPFRPVKMMLAQQGTIAGMVEDHGA
VAVEYKYDGTRFQFHKVGDECRMYSRRLEEVTGAVPDVIEQLCTATTHDVILDGEVIAVS
EGRPRPFQFVLRRFRRKHEVEAAMEKIELVPNVFDVLYLDGETLIDRPFSERREVLTEIL
SEYVAPQWVSDDTGALEAVYQDALDAGHEGVMVKTRGAAYTPGVRGRNWIKVKPAVDTID
LAVVGAEWGEGRRAHLFGSFLLACQDESGELLPVGKVATGLSDEDLAFIYRHLKEFVVAE
KGKEIVLEPKAVFEVGYAEVQKSPNYVSGYALRFPRFVRLREDKSVAEIETLGGVAARYE
QQFTSV
NT seq 1641 nt   +upstreamnt  +downstreamnt
atggagtttgcagcattttcgcgggtctgcgagcaactcgaagggctgagcgggaggctc
gagatgatcgacctcatcgcctccgtcctccccaccctcccggacgaagaactccccatc
tttgtcaggttcgtgatgggtcgggtcttccctgactggagcccccagaaactcggcatc
ggccccaacctcctgtacgaggcgatcgggtatgtcgccgggaggaagaaggccgaggtc
gtcgccgcggtcaacgagaccggggacgtcgggtgtgccgtcgaacaactcctcgccacc
aagtcccagacctcgttcttcgtcgaacctctttccctggccggcgtctacgccgacttc
accaggatcgccaggaccgacgggagccgttcgcagcgggagaaactcaagatcatcaag
gggctcctcggcaacgcaggcgcccttgagggacggtatctctcccgtctcctccttgaa
gaactgcggatcggtgtcggcgaagggaatgtgcgcgacgcgatcgccggggccttcgac
gtcgatgctgccctcgtcgcccatgcgcaccaggccctcaacgacctcggcgaggtcgcg
ctgctggcgcgtaccggcgcggcggccctgcaggacgtgcatatcgcacccttcaggccg
gtgaagatgatgctcgcacagcaggggacgatcgccgggatggtcgaggaccatggcgcg
gttgcggtggagtacaagtacgacggcaccaggttccagttccacaaggtcggggacgag
tgcaggatgtactcgcgccggctcgaggaggtcaccggcgcggttccggacgtgatcgag
caactctgcaccgcgacgacccacgacgtgatcctggacggcgaggtgatcgcggtcagc
gagggccggccccggcccttccagttcgtgctcagacggttcaggcggaagcacgaggtc
gaggcggcgatggagaagattgaacttgtcccgaacgtcttcgatgtcctgtacctcgac
ggcgagaccctcatcgaccgccccttctcggagcggcgcgaggtgctgacagagatactc
tcggagtacgtcgccccccagtgggtgagcgacgacaccggcgccctcgaggcggtctac
caggacgccctggacgcggggcacgagggcgtgatggtcaagacgcgcggggccgcttac
accccgggcgtgcggggcaggaactggatcaaggtcaaacctgcggtcgacaccatcgac
ctcgcggtggtcggggccgagtggggcgaagggcggcgtgcccacctcttcggctccttc
ctcctcgcctgccaggatgaaagcggcgaactcctcccggtcgggaaggtggcgaccggg
ctctcggacgaggatctcgccttcatctaccggcaccttaaggagtttgttgtcgcggaa
aaagggaaggagatcgtcctcgaacccaaggccgtcttcgaggtcgggtacgccgaggtc
cagaagagcccgaactatgtgagcgggtatgccctcaggttcccgcgctttgtcagattg
cgggaggacaagagtgtggccgagatcgagacgctgggcggggtggccgcccggtacgaa
cagcagttcacgtccgtatga

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