Pseudoduganella flava: GO485_03500
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Entry
GO485_03500 CDS
T06346
Name
(GenBank) hypothetical protein
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
mfla
Pseudoduganella flava
Pathway
mfla00040
Pentose and glucuronate interconversions
mfla01100
Metabolic pathways
mfla02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
mfla00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
GO485_03500
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
GO485_03500
Enzymes [BR:
mfla01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
GO485_03500
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Pectinesterase
Big_5
3keto-disac_hyd
Big_2
Beta_helix
Motif
Other DBs
NCBI-ProteinID:
QGZ38205
LinkDB
All DBs
Position
complement(936412..939966)
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AA seq
1184 aa
AA seq
DB search
MRHFAVKAALCAALSLAAVFGQGAGTVDPARQSAPPDGWASQAGGTQGGAAAPAEQIYTV
ANRAQLLAALYNGASNPKIIKVTGIIDMSEGQPYTSSADQAARGAVRVKSNTTLIGADGG
AGFVNGHIVVSNVSQVIIRNLKLVNPCDVGPVWDPTDGATGNWNSAFDAIGISGADHVWV
DHVSFTDAPVTDDFLPVENGHVRQCHDGALDITNGADYVTVSYNVFEQHNKNNLVGGSDS
ATGDEGKLRVTFSNNVFRDVASRAPRVRYGQVHLFNNYYAGSKSHAVYPVSYGVGVGNAA
KILSNNNVFEVAGAHSCPDVVKDFSGTIAGAFKDNGSLLNGAGLGACTVSASVTWTPPYP
YSVRPIALVKANALAQAGGGKLTSTVTGTGSTTIDTGPALACPPSGLYFCDDFQGGGTGK
WDLLPVVGPNGSFRVQDEVAGSANKVLQYTASSTGGVLALMKDSALGAVPSGDYYVEARI
RPMTNGTTGNKQLYLVTRYVDAANWYGGGLNVQNSTASTQVEIAKMLAGSLSRPKQVRKA
IAMDGPFYTVRFEMIGSTLTVYLDGENLGSVTDADFAARGLVGLYTANKSFQIDDVRIGD
PALKPAQLTLDPAATTYAAEAGDNPLQVAVRAVAADGSADGYTAVSSNPQVAGVTVTGNV
ATIAPLAAGTATIVFRSGSDPLLTRTITATIAPRFVQPTQTYQLEDAAYPSAQMEPAPVD
VALKLVFDNPPTLGSGGSVRVFRKADDALVDVVRLGGETDVLGYPGQDQVRKVNTVPVRI
DGNAATIKLHSNRLTYGTEYYVAIADGVFTGATLHGVPFAGIGKLANWSFTTQAAAPTGD
TVTVDDDGPADFRTVQGALDYAMGQFAKAAPVTVRVMNGTYEELLYLRGKDNVRIVGESR
DGTVIRYTNNDSLNPGTGASQAAASNAAPSGGRAIMLVESSDMLQLENLSFNNTTLRGSG
ISAQAETLYFNNDAGRLVARNAAFYSEQDTLNLKGWSWFYRTLVAGNVDFIWGGSRAALF
EDSEIRSVGDTSSATGGGYVLQARVPAATDKGFVFLNSRLTHGPGPGPLHGDVPNGATYL
ARSPGGTSSWDNIAFINCRMDRHVAPVGWAGLGVNGQPAPNPVQASAVSGWREYGTMDLA
GAPLDLSARAGGFQLSASDVAAGFATRAQIFAAFGNGAGWDPQP
NT seq
3555 nt
NT seq
+upstream
nt +downstream
nt
atgcgacatttcgcagtgaaggcggcgctgtgcgccgcgttatcgcttgccgccgtcttc
ggccaaggcgcgggcaccgtcgatccggcgcgccagagtgccccgccggacggctgggca
agccaggccggcggcacgcagggcggcgccgcggcacccgccgagcagatctacacggtg
gccaatcgcgcccagctgctggcggccctctacaacggcgccagcaatccgaagatcatc
aaggtgaccggcatcatcgacatgagcgaagggcagccgtacaccagcagcgccgaccag
gccgcgcgcggcgccgtgcgcgtgaagagcaataccacgctgatcggtgcggacggcggc
gccggcttcgtcaacggccacatcgtcgtgtcgaacgtctcgcaagtcatcatccgcaac
ctgaagctcgtcaatccctgcgacgtgggccccgtgtgggatccgaccgacggcgccacc
ggcaactggaactcggcgttcgatgcgatcggcatctccggcgcggaccacgtgtgggtc
gaccacgtcagcttcacggacgcgccggtgacggacgacttcctgcccgtcgagaatggc
cacgtgcggcaatgccacgacggcgcgctggacatcacgaacggtgccgactacgtgacg
gtgtcgtacaacgtgttcgagcagcacaacaagaacaacctggtgggcggcagcgacagc
gccacgggcgacgaaggcaagttgcgggtcacgttcagcaacaacgtgttccgcgacgtg
gccagtcgcgcaccgcgtgtgcgctacggccaggtccacctgttcaacaactactacgcc
gggtcgaagtcgcatgccgtctacccggtcagctacggcgtcggcgtcggcaatgcggcg
aagatcctgtcgaacaataacgtgttcgaggtggccggcgcgcattcgtgcccggatgtc
gtcaaggacttttccggcacgatcgccggcgccttcaaggacaacggctcgctgctgaac
ggcgcgggcctgggcgcctgcaccgtatcggcgagcgtcacgtggacgccgccatacccg
tacagcgtgcggccgatcgcgctggtgaaagccaatgcgctggcgcaggcgggcggcggc
aagctgacgagcaccgtcaccggtacgggcagcacgacgattgacacgggtcccgcactg
gcatgcccgccgtccggcctgtacttctgcgacgatttccagggcggcggaacgggcaag
tgggacttgctgccggtggtgggcccgaacggcagcttccgcgtgcaggatgaagtggcc
ggcagcgcgaacaaggtgctgcagtacacggcctcgtcgacgggcggcgtgctggcgctg
atgaaggacagcgcgctgggtgccgtgccctccggcgactactacgtggaagcgcgcatc
cgcccgatgacgaacggcaccaccggcaacaagcagctgtacctggtcacgcgctacgtc
gatgcggccaactggtatggcggcggcttgaacgtgcagaacagcacggccagcacgcag
gtcgagatcgcgaagatgctggccggttcgctgagccggccgaagcaggtgcgcaaggcg
atcgcgatggatggcccgttctacacggtgcgcttcgagatgatcggcagtacgttgacg
gtgtacctggatggcgaaaacctcggctccgtcacggatgcggacttcgcggcccgcggc
ctcgtcggcctgtacacggccaataaatcgttccagatcgacgacgtgcgcatcggcgat
cccgcgctgaaaccggcgcagctgacgctcgatcccgccgcgacgacgtacgcggccgag
gcgggcgacaatccgctgcaggtggcggtgcgggcggtggcggccgacggcagtgccgac
ggctacacggccgtctccagcaacccgcaggtggccggcgtcacggtcacgggcaacgtc
gcgacgatcgcgccgctggccgccggcacggccaccatcgtgttccgctccggctcggac
ccgctgctgacgcgcacgatcacggccacgatcgcgccgcgcttcgtgcagccgacgcag
acgtaccagctggaggacgccgcgtatccgtccgcgcagatggagccggcgccggtcgac
gtggcgctcaagctcgtgttcgacaacccgcccacgttgggcagcggcggctcggtgcgc
gtgttccgcaaggccgacgatgcgctggtcgacgtggtgcgcctcggcggcgagacggac
gtgctgggctaccccggccaggaccaggtgcgcaaggtgaacacggtaccggtccggatc
gacggcaatgccgccaccatcaagctgcacagcaaccggctcacgtacggcaccgagtac
tacgtggcgatcgccgacggcgtgttcacgggcgccacgttgcacggcgtgccgtttgcg
ggcatcggcaagctggccaactggtcgttcacgacgcaggctgccgcgccgacgggcgac
acggtcaccgtggacgacgacggcccggccgacttccgcaccgtgcagggcgcgctcgac
tacgcgatggggcagttcgccaaggccgctcccgtcacagtccgcgtgatgaacggcacc
tacgaggaattgctttacctgcgcggcaaggacaatgtgcgcatcgtcggcgagagccgc
gacggcaccgtgatccgctacacgaacaacgacagcctgaatcccggcactggcgccagc
caggccgcggccagcaacgcggcaccgagcgggggcagggcgatcatgctggtcgagtcg
tccgacatgctgcagctggagaacctcagcttcaacaacacgacgttgcgcgggtccggc
atctcggcgcaggccgaaacgctgtacttcaacaacgacgcgggccggctggtggcaagg
aacgccgcgttctacagcgagcaagacacgctgaacctgaaaggctggtcgtggttctac
cgcacgctcgttgcgggcaacgtcgacttcatctggggcggcagccgcgccgcgctgttc
gaggacagcgagatccgttcggtgggcgatacgagcagcgcaacgggcggcggctatgtg
ctgcaggcgcgcgtgcccgcggccaccgacaagggcttcgtgttcctgaacagccgcctg
acgcacggccccggtcccggcccgctgcacggcgacgtgccgaatggggcgacttatctg
gcgcgcagcccgggcggcacgtcgagctgggacaatatcgcgttcatcaactgccggatg
gaccggcacgtggccccggtgggctgggccggcctgggcgtgaacggccagccggcaccg
aaccccgtccaggccagtgcggtgtccggctggcgcgaatacggcacgatggacttggcg
ggcgcgccgctcgacctgtcggccagggcagggggcttccagctcagcgccagcgacgtg
gcggcgggcttcgcaacgcgcgcgcagatcttcgcggcgttcggcaacggcgccgggtgg
gacccgcagccgtaa
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