Pseudoduganella flava: GO485_04985
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Entry
GO485_04985 CDS
T06346
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
mfla
Pseudoduganella flava
Pathway
mfla03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mfla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
GO485_04985 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mfla03400
]
GO485_04985 (recB)
Enzymes [BR:
mfla01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
GO485_04985 (recB)
DNA repair and recombination proteins [BR:
mfla03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
GO485_04985 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
UvrD_C_2
AAA_19
PDDEXK_1
Motif
Other DBs
NCBI-ProteinID:
QGZ38471
LinkDB
All DBs
Position
complement(1276895..1280530)
Genome browser
AA seq
1211 aa
AA seq
DB search
MSRLLEPLAFPLHGSRLIEASAGTGKTWTIAALYLRLVLGHGNEAAYVRPLLPADILVMT
FTRAATRELSNRIRERLVEAAAYFRGQADNADPYLAALLDAYPDEAARLQAGHRLMLAAE
TMDEAAIFTIDAWCQRMLREHAFDSGSLFDEELITDEQALFEDAVHDYWRQHVYPLKEPA
LGALLECWPDVARLKTALRDLVKRAEDGWHRDGDTIEPLGALIGRSLRERQELLAALKAG
WAERADRMEQWLERQKAAKLLNGRMMNAAWLVGWFGALRAWANDPAQVALDLKKGWERLA
PDGVGEAYSGGEAIPEDFDELVRLRTGLANCEPLAHRLHRHAAGVVAERMAELKARNRQF
GFADMLVRLQEALEGPNGAALRERITQQYPVALVDEFQDTAPTQYRIFDLLYRVAANDPQ
LGLFLIGDPKQSIYGFRGADIHSYLAARRATEGRHYQLGTNYRSTREVVEAVNRIFLHAE
STAGGTGFARGAFRFRDGIVNPLPFEPVDAKGRGERLVGVEGQLQALTVSCSDVLDLKAD
DYRDFFAHHCAEHIVQLLNHPGTGFDGPDGFRRLEPADIAILVRDRKEATAVRRALQQRR
VPSVYLSDKDSVLESDEAQDVLRWLAALANPLDGALARAALATRTANLPLAELARLSSDE
LAWEQRVEQLKSLHTVWQRQGVLAMLRRFIHELGLPAALLAQPGGERRLTNLLHLAELLQ
SASRQLDGEQALIRWMAEQVEGEGAAGDEQVLRLESDAELVKVVTVHKSKGLEYPLVYLP
FAVTARKVEKRNRSFFEYTDGDGVRRIDMALSDEAHAAVEAARIEEELRLLYVALTRARH
FLWLGVAALPGRKEGSNLLHESALGYLLTGGEHLPAEALRERWQQLAGDCGAIGIAGIGA
PERMTVLNRVERRAPLVETRPYDAQFERDWSVGSFTSLARGTQAAPRHALEETLLEGDDS
ATLPAGDDAPWHRFPRGSVPGNFLHEQLEWLAQEGFASVHDATFEQRIGRRIERAGWGHR
LDDTIAWLRAAVTTPLPPLGVPLTEIGAVLPEMEFWFPSERLATGALDALCRRHLLGGIP
RPALPQRALHGMLKGFSDLVFEHAGRYWVLDYKSNALGANDAAYHARALAGGMAEHRYDV
QGAIYLLALHRLLAARIGAAYDPATHLGGAVFFFLRGIGNATTRGCHVLEPDALLLDELD
ALLRRTGDHDD
NT seq
3636 nt
NT seq
+upstream
nt +downstream
nt
atgagccgcctgcttgaacccctcgcgtttcccctgcatggctcgcggctgatcgaggcg
tcggccggcaccggcaagacgtggacgatcgccgcactgtacctgcgcctcgtgctgggg
cacggcaatgaagcggcctatgtgcgcccgctgctgccggcggacatcctcgtgatgacg
ttcacccgcgcggcaacgcgcgagctgtcgaaccgcatccgcgaacggctcgttgaagcg
gcggcatacttccgcggccaggcggacaatgcggacccgtaccttgccgcgctgctggac
gcttacccggacgaagcggcgcgcctgcaggccggccaccggctgatgctggccgccgag
acgatggacgaggcggcgatcttcacgatcgacgcgtggtgccagcgcatgttgcgcgag
cacgcgttcgacagcggcagcctgttcgacgaggaactgatcacggacgagcaggcgctg
ttcgaggatgccgtgcacgactactggcgccagcacgtctatccgctgaaggagccggcg
ctgggcgcgctgctggaatgctggccggacgtcgcgcgcctgaagacggcgctgcgcgac
ctggtcaagcgggccgaggacggctggcaccgcgatggcgataccatcgagccgctgggc
gcgctgatcggccgttcgctgcgcgagcgccaggagctgctggccgcgttgaaggccggc
tgggcggaacgcgcggaccggatggaacaatggctggagcggcagaaggccgccaagctg
ctgaacggccgcatgatgaacgcggcctggctggtcggctggttcggcgcgctgcgggca
tgggccaacgatccggcgcaggtggcgttggacttgaaaaaagggtgggagcggctggcc
ccggatggcgtcggcgaagcgtattccggcggcgaggcgattccggaggacttcgatgaa
ctggtgcggctgcgcacgggcctggccaactgcgagccgctggcgcaccggctgcaccgg
cacgcggcaggcgtcgtcgccgaacggatggcggaactgaaggcgcgcaaccgccagttc
gggtttgccgacatgctggtgcgcctgcaggaagcgctggaagggccgaacggcgccgcg
ctgcgcgagcgcatcacgcagcagtacccggtggcgctggtcgacgaattccaggacacg
gcgcccacccagtaccgcatcttcgatttgctgtaccgcgtggccgccaatgacccgcaa
ctgggcctgttcctgatcggcgacccgaagcagtcgatctacggtttccgcggcgccgac
atccacagctacctggcggcgcgccgcgccaccgaaggccggcactaccagctgggcacg
aactaccgctccacccgcgaagtggtggaagccgtcaaccggatcttcctgcatgccgag
agcacggccggcggcacgggcttcgcgcgcggcgcgttccgcttccgcgacggcatcgtc
aacccgttgccgttcgagcctgtcgatgcgaaggggcgcggcgagcggctcgttggggtc
gaaggtcagctgcaggcgctgacggtgtcgtgcagcgacgtgctggacctgaaggcggac
gactaccgcgacttcttcgcgcaccactgcgccgagcacatcgtgcagttgctgaaccat
cccggcacgggattcgacgggccggacggcttccggcgcctggagccggccgacatcgcg
atcctcgtgcgcgaccgcaaggaagcaaccgccgtgcggcgcgcgctgcagcagcggcgc
gtacccagcgtctacctgtccgacaaggattccgtgctggagtcggacgaggcgcaggac
gtgctgcgctggctggcggcattggccaatccgctcgacggcgcgctggcccgcgcggcg
ctggccacgcgcacggccaacctgccgctggcggaactggcgcggctgtcgtcggacgaa
ctggcgtgggaacagcgcgtcgagcagttgaaaagcctgcacacggtgtggcagcgccag
ggcgtgctggcgatgctgcgccgcttcatccacgaactgggcctgccggccgcgctgctg
gcgcaaccgggcggcgagcggcggctgacgaacctgctgcacctggcggaactgctgcaa
tcggccagccgccagctggacggcgaacaggcactgatccgctggatggccgagcaggtc
gaaggcgagggcgcggccggcgacgagcaggtgttgcggctggagtccgacgcggaactg
gtcaaggtcgtcaccgtgcacaagtcgaaggggctggaatacccgctcgtctacctgccg
ttcgccgtcacggcgcgcaaggtcgaaaagcgcaaccgcagcttcttcgaatacaccgat
ggcgacggcgtgcggcgcatcgacatggcgctgtcggacgaagcccatgccgccgtcgaa
gcggcccgcatcgaggaagaactgcgcctgctgtacgtggcgctgacgcgcgcgcggcac
ttcctgtggctcggtgtcgcggcgctgcccggccgcaaggaaggcagcaatctgctgcat
gaatcggcgctcggctacctgctgacgggcggcgaacacctgccggccgaggcgctgcgc
gagcgctggcagcagctggccggagactgcggggcgatcggcatcgccggtatcggtgct
cccgaacgcatgacggtgctgaaccgcgtggagcggcgcgcgccgctcgtcgagacgcgg
ccatacgacgcccagttcgagcgcgactggtcggtaggcagcttcacgtcgctggcgcgc
ggcacacaggcggcaccgcgccacgcgctggaggaaacgctgctcgaaggcgacgacagc
gccacgctgccggctggcgacgacgcaccctggcatcgtttcccgcgcggctccgtgccc
ggcaacttcctgcacgagcagcttgaatggctggcgcaggaaggcttcgccagcgtgcac
gacgccacgttcgagcagcgcatcgggcggcgcatcgagcgcgccggctggggccaccgg
ctggacgacacgatcgcctggctgcgcgcggccgtcacgacgccgctgccgccgctgggc
gtgccgttgacggagatcggcgccgtgctgcccgagatggaattctggttccccagcgag
cggctggcgacgggcgcgctcgatgccctgtgccggcgccacctgttgggcggcatccca
cgtccggcgctgccgcagcgtgcgctgcacggcatgctgaaaggcttctcggacctggtg
ttcgagcacgccggccgctactgggtgctggactacaaatcgaatgcgctgggcgccaac
gacgccgcgtaccacgcgcgggcgctggcgggtggcatggccgaacaccgctacgacgtg
cagggggcgatctacctgctggcgctccaccggctgctggcggcccggatcggcgcggcc
tatgacccggccacgcacctgggcggcgccgtgttcttcttcctgcgcgggatcggcaac
gccacgacgcgcggctgccatgtgctggagccggatgcgctgttgctggacgaactggac
gcactgctgcgccgcaccggagaccatgatgattga
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