Pseudoduganella flava: GO485_08730
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Entry
GO485_08730 CDS
T06346
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
mfla
Pseudoduganella flava
Pathway
mfla03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mfla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GO485_08730
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mfla03019
]
GO485_08730
03400 DNA repair and recombination proteins [BR:
mfla03400
]
GO485_08730
Enzymes [BR:
mfla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GO485_08730
Messenger RNA biogenesis [BR:
mfla03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GO485_08730
DNA repair and recombination proteins [BR:
mfla03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
GO485_08730
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
Cas3-like_C_2
AAA_30
Glyco_hydro_57
PcrA_UvrD_tudor
SWI2_SNF2
Motif
Other DBs
NCBI-ProteinID:
QGZ43011
LinkDB
All DBs
Position
complement(2111271..2113001)
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AA seq
576 aa
AA seq
DB search
MSAGELRGAQRAGTARTRRIRSLLHNVFGVDKLRTGQQKVIDSVLEGRDTLAIMPTGSGK
SLCYQIPASIFKGKTVVVSPLISLMKDQLEKLEEIGIGAAQLNSSLSREEELEALASIRN
NLSNIIFCTPERLVTPDFLEVLKETEITLLVVDEAHCISQWGHDFRPAYLEIGAALRALG
QPPVLALTATATEEVIEDIAHQLGARRMNVINTGVYRPNLHYRVIQVTNPAEKLTQALRL
VRETAGVGIVYAATVKAATELYERLEEDGESVALYHGRLPAKERQRNQELFMNGERRVMV
ATNAFGMGIDKSDTRFVIHLQVPANLEAYYQESGRAGRDGKDAECTLLYFQDDKRVQQFF
LVKHYPSAQDLRAVYEAAAALVPCQSDVIRTAVPDMPDTQLKVCLKLLKDGKLLRQNRKL
DWLLTNRDAQQVHFEQLAAIYEQKQERDHQALEQMVAYAQSGYCRWKLLLDYFGDDSVDS
AAERASARGTGASWQCGCCDNCISPPAVQPIDDEEPVFEPPPEPSAPHGPVIAVGSQVKV
PKFDIGTVLSVAGDQITIEFPENTTKTFMAEFVQPV
NT seq
1731 nt
NT seq
+upstream
nt +downstream
nt
atgagcgccggcgaactgcgtggcgcgcagcgggccggcacggcgcgtacccggcgcatc
cgcagcctgctgcacaacgtcttcggcgtcgacaagctgcgtaccgggcagcaaaaagtc
atcgacagcgtcctggaagggcgcgacaccctggccatcatgcccaccggcagcggcaag
tcgctgtgttaccagattcccgcctcgatcttcaagggcaagacggtggtcgtatcgccg
ctgatctccctgatgaaggaccagctggaaaagctggaggaaatcggcatcggtgccgcc
cagctgaacagcagcctgtcgcgcgaggaggaactggaagcgctggcgagcattcgcaac
aacctgtccaacatcatcttctgcacgcccgagcggctggtcacgccggacttcctggag
gtgctgaaggaaacggaaatcacgctgctcgtcgtcgacgaggcgcactgcatctcgcaa
tggggccatgacttccgtcccgcctacctggaaatcggcgcggcgctgcgcgcgctgggc
cagccgcccgtgctggcgctgacggccacggcgacggaagaagtgatcgaggacatcgcc
caccagctgggcgcgcggcgcatgaacgtcatcaacacgggcgtctaccggcccaacctg
cactaccgcgtgatccaggtcaccaaccccgccgaaaagctgacgcaggcgctgcgcctg
gtgcgcgagacggcaggcgtcggcatcgtctacgcggccaccgtgaaggcggccaccgaa
ctgtacgagcggctcgaagaagacggggaaagcgtggcgctgtaccacggccgcctgccc
gcgaaggagcgccagcgcaaccaggaactgttcatgaacggcgagcggcgcgtgatggtg
gccaccaacgcgttcggcatgggcatcgacaagagcgacacgcgcttcgtgatccacctg
caggtgccggccaacctggaagcgtattaccaggaatcgggccgcgccggccgcgacggc
aaggatgccgaatgcacgctgctgtacttccaggacgacaagcgggtgcagcagttcttc
ctcgtcaagcactacccgtccgcgcaggatttgcgcgccgtgtacgaggcggcggccgcg
ctggtgccatgccagtccgacgtgatccgcaccgcggtgccggacatgccggacacccag
ctgaaggtttgcctgaagctgctgaaggatggcaagctgctgcgccagaaccgcaagctc
gactggctgctgacgaaccgcgacgcccagcaagtccacttcgaacagctggccgcgatc
tacgagcagaagcaggagcgtgaccaccaggcactggagcagatggtggcatacgcgcag
agcggctactgccgctggaagctgctgctcgattatttcggcgacgattccgtggacagc
gcggccgagcgcgccagcgcccggggcacgggcgccagctggcaatgcggctgctgcgac
aactgcatctcgccgcccgccgtgcagccgatcgacgacgaggagccggtgtttgaaccg
ccgcccgaaccgtcagcaccgcacggccccgtcatcgccgtcggcagccaggtcaaggtg
ccgaaattcgacatcggcacggtgctgtccgtggccggcgaccagatcacgatcgaattc
ccggaaaacacgacgaagacgttcatggcggagttcgttcagccggtgtag
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