Pseudoduganella flava: GO485_11085
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Entry
GO485_11085 CDS
T06346
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
mfla
Pseudoduganella flava
Pathway
mfla03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mfla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GO485_11085
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mfla03019
]
GO485_11085
Enzymes [BR:
mfla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GO485_11085
Messenger RNA biogenesis [BR:
mfla03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GO485_11085
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
P-loop_SecA
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QGZ39537
UniProt:
A0A562PW86
LinkDB
All DBs
Position
complement(2670222..2671691)
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AA seq
489 aa
AA seq
DB search
MSDIETTAQPATPAQVRFSDFGLSPAILQALTDQGYEHPTPIQAQAIPVVLQGRDVMGAA
QTGTGKTAGFSLPIIQLLLAHANTSMSPARHPVRALVLTPTRELAVQVAENVANYCKHTP
LRSTVVYGGVDIKPQAQIMRGGVEIVIATPGRLLDHVEQKSISLSQVQMLVMDEADRMLD
MGFLPDLQRIINLLPKQRQNLMFSATFSPEIKKLANSFLTNPVTIEVARSNATADKVTQV
VYKVSEEHKRDAVAYILRQREMKQVIVFSNTKIGASRLARGLEQEGMKASAIHGDKTQQE
RMAALEAFKRGEIDVLVATDVAARGLDISDLPCVINYDLPYNAEDYVHRIGRTGRAGASG
DAISIYSDKDERLLADIEKLIKQTIKRGALEGFNPSGRGGEQRHGERRASARPERGERSE
RSERPERGERPDRGGRPMAPRRDKIDPWFLKPYEPSRGPAGATASVAPAPSAAKPKQKVA
ALLGGLRKE
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atgtcagacatcgaaacaaccgcccagcctgcgacgcccgcccaggtgcgtttctccgac
ttcggcctgtcgcctgcgatcctgcaggcgctgacggatcaaggctacgaacatccgacc
ccgatccaggcgcaggccattccggtggtgttgcagggacgcgacgtgatgggcgcggcc
cagacgggcacgggcaagacggcgggcttctcgctgccgatcatccagctgctgctggcg
catgcgaacacgagcatgagcccggcgcgccatccggtgcgcgcgctggtgttgacgccg
acccgcgagctggcggtgcaggtggcggaaaacgtcgccaactactgcaagcacacgccg
ctgcgttcgaccgtcgtgtacggcggtgtcgacatcaagccgcaggcgcagatcatgcgc
ggcggcgtcgagatcgtcatcgccacgccgggccgcctgctcgaccacgtggagcagaag
agcatctcgctgtcgcaggtgcagatgctggtgatggacgaagcggaccgcatgctggac
atgggcttcctgcccgacctgcagcgcatcatcaacctgctgccgaagcagcgccagaac
ctgatgttctcggccacgttctcacccgagatcaagaagctggcgaacagcttcctgacc
aacccggtgacgatcgaggtggcgcgcagcaacgcgacggccgacaaggtcacgcaggtg
gtctacaaggtttcggaagagcacaagcgcgacgccgtcgcctacattctgcgccagcgc
gagatgaagcaggtgatcgtgttttcgaacacgaagatcggcgcctcgcgcctggcccgc
ggcctggaacaggaaggcatgaaggcttccgcgatccacggcgacaagacgcagcaggag
cgcatggccgcgctggaagcgttcaagcgcggcgagatcgacgtgctggtggcgaccgac
gtggccgcgcgcggcctggacatctctgacctgccgtgcgtgatcaactacgacctgccg
tacaacgcggaagactacgtgcaccgcatcggccgcacgggtcgtgccggcgcctcgggc
gatgcgatctcgatctattcggacaaggacgagcgcctgctggccgacatcgagaagctg
atcaagcagaccatcaagcgcggcgcgctggaaggcttcaacccgtccggccgcggcggc
gagcagcgccacggcgaacggcgcgcgtcggcacgcccggagcgtggcgaacgcagcgaa
cggagcgagcgccccgaacgtggcgaacgcccggaccgcggcggccgcccgatggcaccg
cggcgcgacaagatcgatccttggttcctgaagccgtatgagccgagccgtgggcccgcg
ggtgcgacggcatccgttgcgccggcgccgtcggccgcgaagccgaagcagaaggtggcg
gcgttgctgggtgggttgcgcaaggagtaa
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