Pseudoduganella flava: GO485_14375
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Entry
GO485_14375 CDS
T06346
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mfla
Pseudoduganella flava
Brite
KEGG Orthology (KO) [BR:
mfla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mfla03016
]
GO485_14375
Enzymes [BR:
mfla01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
GO485_14375
Transfer RNA biogenesis [BR:
mfla03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
GO485_14375
Prokaryotic type
tRNA splicing ligases
GO485_14375
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
DUF7919
Motif
Other DBs
NCBI-ProteinID:
QGZ40123
UniProt:
A0A562P731
LinkDB
All DBs
Position
complement(3407807..3409036)
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AA seq
409 aa
AA seq
DB search
MNDYDTMDVAGGRPVKMWTHGVPVEPEAKQQLANTAKMPFIYKHIAVMPDVHLGKGSTIG
SVIPTLGAVIPAAVGVDIGCGMMAAKTTLTANDLPDNLGPLRSAIEKAIPHGLSPKTRSF
KGRDAGSWQDPPSAVDAAWMQLKDEFDVICAKTPKLRHTNNYKHLGTLGTGNHFIEVCLD
EQNAVWLMLHSGSRGVGNAIGTHFIELAQQDMRTHLANLPDRDLAYLKEGTRHYDDYVEA
VGWAQKFARMNREVMMQNLIQAVRAVIRKPFETHVEAVNCHHNYVQKERHFGQDVLVTRK
GAVSAKAGELGIIPGSMGARSYIVRGKGNEESFTSCSHGAGRTMSRSEAKRRFTREDQVR
ATQGVECRKDEGVVDEIPMAYKDIDAVMHAQRDLVEVVHTLKQVVCVKG
NT seq
1230 nt
NT seq
+upstream
nt +downstream
nt
atgaacgattacgacacgatggacgtggcgggcggccggcccgtcaagatgtggacgcac
ggcgtgccggtagagccggaggcgaagcagcagctggcgaacacggcgaagatgcccttc
atctacaagcatattgccgtgatgccggatgtccaccttggcaagggctcgacgatcggc
agcgtcatccccacgctgggcgccgtgatcccagccgccgtcggcgtcgacatcggatgc
ggcatgatggccgcgaagacgacgctgaccgcgaacgacctgcccgataatctcgggccc
ttgcgcagcgcgatcgagaaggccattccgcacggcctgtcgccgaagacgcgcagcttc
aagggccgcgacgcaggctcgtggcaggacccgccctcggccgtcgacgccgcgtggatg
cagctgaaggacgaattcgacgtcatctgcgcgaagacgccgaagctgcgccacacgaac
aactacaagcacctgggcacgctgggtacgggcaatcacttcatcgaagtgtgcctggat
gagcagaacgccgtgtggctgatgctgcactcgggttcgcgcggcgtcggcaatgcgatc
ggcacgcacttcatcgaactggcgcagcaggacatgcgcacgcacctggccaacctgccg
gaccgggacctggcgtacctgaaggaaggcacccggcattacgacgactacgtggaagcg
gtgggctgggcgcagaagtttgcgcgcatgaaccgcgaggtcatgatgcagaacctgatc
caggccgtgcgcgccgtgatcaggaagccgttcgagacccatgtggaagccgtcaactgc
caccataactacgtgcagaaggagcgccacttcggccaggacgtgctggttacgcgcaag
ggggccgtctccgcgaaggccggagagctcggcatcattcccggctcgatgggcgcgcgc
agctacatcgtgcgcggcaagggcaacgaggaaagcttcaccagctgcagccacggcgcc
gggcggacgatgagccgcagcgaagccaagcgccgcttcacgcgcgaggaccaggtgcgc
gccacgcagggcgtcgaatgccgcaaggacgaaggcgtcgtcgacgagatccctatggcc
tacaaggacatcgacgcggtgatgcacgcccagcgcgacctggtggaagtggtgcacacc
ctcaagcaggtcgtgtgcgtcaaaggctga
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