Pseudoduganella flava: GO485_25050
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Entry
GO485_25050 CDS
T06346
Name
(GenBank) helix-turn-helix domain-containing protein
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
mfla
Pseudoduganella flava
Pathway
mfla03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
mfla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
GO485_25050
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
mfla03000
]
GO485_25050
03400 DNA repair and recombination proteins [BR:
mfla03400
]
GO485_25050
Enzymes [BR:
mfla01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
GO485_25050
Transcription factors [BR:
mfla03000
]
Prokaryotic type
Helix-turn-helix
AraC family
GO485_25050
DNA repair and recombination proteins [BR:
mfla03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
GO485_25050
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ada_Zn_binding
AlkA_N
HTH_18
HTH_AraC
TetR_N
DUF3072
HTH_23
Motif
Other DBs
NCBI-ProteinID:
QGZ41996
LinkDB
All DBs
Position
complement(5835537..5836844)
Genome browser
AA seq
435 aa
AA seq
DB search
MDLNDRISCYRALQTRDTRFDGRLFVGVTSTGIYCRPICPARTARIENCRFFASAAAAQQ
EGFRPCLRCRPESAPGGGAWRGSSDTVARALALFAETGHDERAVEAVAARLQVSARQLRR
LFQQHLGAAPVTVLQTRRILLAKQLIHETRLPMTDVAMAAGFGSVRRFNETFKAMYRRAP
SALRHGAGNAASGEELVLRLRYQPPYDWSAMLSACVPLPGVAVTGQGQYARTLRIGAVPG
TLRVAHDPHRHGLTVGLRLADVRAMPEALERVTRVFDTAADIATINAHLSTDPLLAPLVA
RRPGLRPLGSWDGFEAAVLALLPAAGVAALLDLCADPLPATLCLPGLERLFPTAAAVAAA
HLATLPVTAAQHGALRTLAEAAAADPTLFDAVADVTFDHSAFNHPALAERSAGWQPWLAY
AARHLDSLNHNEETS
NT seq
1308 nt
NT seq
+upstream
nt +downstream
nt
atggacttgaacgaccgcatcagttgctaccgcgccctgcagacgcgcgacacccgcttc
gacgggcgcctgtttgtcggcgtcacgtcgacggggatctactgccgcccgatctgcccg
gcacgtacggcgcgcatcgagaactgccgcttcttcgcctcggcggccgccgcgcagcag
gaaggcttccggccatgcctgcgctgccggcccgagtccgcgcccggtggcggcgcctgg
cgcggcagctccgacacggtggcccgcgcgctggcgctgttcgccgagacggggcatgac
gagcgcgccgtcgaagccgtcgccgcgcggctgcaagtcagcgcgcgccagctgcgccgg
ctgttccagcaacacctgggcgccgctcccgtcacggtgctgcagacacgccgcatcctc
cttgccaagcagctgatccacgaaacgcgcctgccgatgacggacgtggcgatggccgcc
ggcttcggcagcgtgcgccgcttcaacgagacgttcaaggcgatgtaccggcgcgcgccc
agtgcactgcgccacggcgccggcaacgcggccagcggcgaggaactggtgctgcgcctg
cgctaccagccgccgtacgactggtcggcgatgctgtccgcgtgcgtgccgctgcccggt
gtcgcagtgaccggccagggccagtacgcccgcacgctgcggatcggcgccgtgcccggc
acgctgcgcgtcgcgcatgatccgcaccgccacggtctcaccgtcgggctgcgcctggcc
gacgtacgcgcgatgccggaagcgctggaacgcgtcacccgcgtgttcgacacggcggcc
gacatcgccacgatcaacgcccacctgtccaccgatccgctgctcgcaccgctggtcgcg
cggcggcccggcttgcgcccactgggcagctgggacggcttcgaagcggccgtgctggcg
ctgctgccggcagccggcgtcgcggcgctgctggacctgtgcgccgacccgctgcccgcc
acgctttgcctgccggggctggagcggctgttcccgacggcagccgccgtcgcggcggcg
cacctggcgaccctgcctgtcacggctgcacaacacggcgccctgcgcacactggccgag
gccgcggcggccgacccgacgttgttcgatgccgtcgccgacgtgacgttcgaccactcg
gctttcaaccacccggcgctcgccgagcgcagtgccggctggcagccctggctggcctat
gcggcgcgccatctcgattcactcaaccacaacgaggagacctcatga
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