Pseudoduganella flava: GO485_25295
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Entry
GO485_25295 CDS
T06346
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
mfla
Pseudoduganella flava
Pathway
mfla03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mfla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GO485_25295
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mfla03019
]
GO485_25295
Enzymes [BR:
mfla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GO485_25295
Messenger RNA biogenesis [BR:
mfla03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GO485_25295
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
P-loop_SecA
Sacchrp_dh_NADP
Motif
Other DBs
NCBI-ProteinID:
QGZ42034
LinkDB
All DBs
Position
complement(5876222..5877658)
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AA seq
478 aa
AA seq
DB search
MSFSQLGLSDAIVRAVTETGYTAPTPIQSQAIPAVLNGGDLLAGAQTGTGKTAGFTLPLL
QRLSTDAYGSKLTNNTSQRPIRALILTPTRELAAQVEECVRVYGKYTKLNSAVIFGGVSI
NPQIKQLKHGVDILVATPGRLLDHLAQGTVNLDKVEILVLDEADRMLDMGFIRDIRKVLA
ALPPKRQNLLFSATFSDEIKALADGLLDKPATIEVARRNSTVEIIAQKIHPVDRDKKHPM
LSYLIRTHKWTQVLVFTRTKHGANKLVEQLGADGIKAMAIHGNKSQSARTRALAEFKDGT
LQVLVATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRIGRTGRAGAKGEAVSLVCVDEHD
MLKDIEKLIKQTLPREVVPGFEPDPNARPQPIQLRSGTGQHRNPRPGGGNGGGGRGKPNA
SRATAGSGNGGGNGGAGGGRSGSGGGGRNGSGGRSAGPRNPQRSGAPASARSGGGRDR
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
atgtctttctctcaacttggcttgtccgatgcgatcgttcgcgccgtgaccgaaacgggt
tacaccgccccaacgccgatccagtcgcaggccattccggctgtgctgaacggcggtgac
ctgctggccggcgcacagaccggcaccggcaagacggccggcttcacgctgccgctgctg
caacggctgtccaccgacgcctacggttccaaactgacgaacaacacgtcgcagcgcccg
atccgcgcgctgatcctgacgccgacgcgcgaactggccgcccaggtcgaggaatgcgtg
cgcgtgtacggcaagtacacgaagctcaattcggccgtgatcttcggcggcgtgtcgatc
aatccgcagatcaagcagttgaagcatggcgtcgacatcctcgtcgccacgccgggccgc
ctgctggaccacctggcacagggcaccgtgaacctcgacaaggtcgagatcctcgtgctc
gacgaagcggaccgcatgctcgacatgggcttcatccgcgacatccgcaaggtgctcgcc
gcgctgccgccgaaacgccagaacctgctgttctcggccacgttctcggacgagatcaag
gcgctggccgacggcctgctggacaagccggccacgatcgaagtggcgcgccgcaactcg
acagtggagatcatcgcgcagaagatccacccggtcgaccgcgacaagaaacacccgatg
ctgtcctacctgatccgcacgcacaagtggacgcaggtgctcgtgttcacccgcaccaag
cacggcgccaacaagctcgtcgaacagctgggcgcggacggcatcaaggcgatggcgatc
cacggcaacaagagccagtcggcgcgcacccgcgccctggccgagttcaaggacggcacc
ttgcaggtgctggtggccaccgatatcgccgcgcgcggcatcgacatcgaccagttgccg
cacgtcgtcaactacgacctgccgaacgtgccggaagactacgtgcaccggatcggccgc
accggccgtgccggtgccaagggcgaggcggtatcgctcgtctgcgtggacgagcacgac
atgctgaaggatattgaaaagctcatcaagcagacgttgccgcgcgaagtcgtgcccggc
ttcgagcccgatccgaacgcccgcccgcagccgatccagctgcgcagcggcacgggccag
caccgcaatccccgcccgggcggcggcaatggcggcggcggccgcggcaagccgaacgcg
tcgcgcgcaacggccggtagcggcaatggcggcggcaacggcggcgcaggcggtgggcgc
agcggttccggcggcggcggccgtaacggttcgggcggccgcagcgccggcccacgcaat
ccgcagcgcagcggggcgcccgcctcggcacgctccggcggcggccgcgaccgctga
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