Pseudoduganella flava: GO485_26795
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Entry
GO485_26795 CDS
T06346
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
mfla
Pseudoduganella flava
Pathway
mfla03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mfla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GO485_26795 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mfla03019
]
GO485_26795 (rnr)
03016 Transfer RNA biogenesis [BR:
mfla03016
]
GO485_26795 (rnr)
Enzymes [BR:
mfla01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
GO485_26795 (rnr)
Messenger RNA biogenesis [BR:
mfla03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GO485_26795 (rnr)
Transfer RNA biogenesis [BR:
mfla03016
]
Prokaryotic type
tRNA degradation factors
GO485_26795 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
Rrp44_S1
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
QGZ42291
UniProt:
A0A562PKA3
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All DBs
Position
6202618..6205245
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AA seq
875 aa
AA seq
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MNQTIHTIPSREEILGIFRSANAPLDLRTLALSLQVNPESHAVLTRRLSAMERDGQIRSD
ASGFYVLADHSDFVAGRVSAHRDGFGFVIPDEPGDDLFLSEREMQKVLHGDKVLARVTGY
DRRGRPEGTIVEVVERGTTHIIGRLLKDNGVWIVAPEDKRIGQDILLTGTPGKAKSGQIV
SVELTEQPARFKQPVGRIVEVLGDMDDPGMEIEIAVRKFGVPHMFSESALAQAKKLPDVV
HEKDWGDRVDLRDVPLVTIDGEDARDFDDAVYCEPVKIGRTNAFRLIVAIADVSHYVKPN
DALDTDALERSTSVYFPRRVIPMLPEKLSNGLCSLNPNVDRLTLVCDAVITATGDIKAYQ
FYPAVMHSAARFTYNEVAAILSNTKGPEAAKRAHLVPHLQNLYAVFHALQKARLERGAID
FETTETYIVCNPAGKIEKIIPRTRNDAHKLIEECMLAANVCAADLLLRHKHPGTYRIHAA
PTKEKLTQVREFLKQVGLSLGGGDTPAARDYAELMKKIKERPDANLLQTMLLRSMQQAVY
SPDNIGHFGLAYEAYAHFTSPIRRYPDLLTHRAIKAILQGKKYEPKIADKGVLNTTVSNA
TRRQQLKDKAEGKEPKAARDMTVWDALGVHCSANERRADEASRDVEAWLKCYFMQDKLGE
EFSGIITGVTTFGIFVQLDQLFVEGLVHVTDLGADYFQYDDARHELRGERTGKRYQLTDR
VTVQVVRVDLESRKIDLRLAPSETDAIAPPRGKRAYESFESDEFGADDAKPRRGRSGGGR
GGAGKGGARGAAPGGNEGATSRKGAARRDEPAPRSGPAPSISLLPQVEYEKPKSRTKAAA
PAKRADKKTTAKTAAKSAAKAPAKSPAAGKAKKKR
NT seq
2628 nt
NT seq
+upstream
nt +downstream
nt
ttgaaccagacgatccacaccattcccagccgcgaggaaatcctcggcatcttccgcagt
gccaatgcgccgctcgacctgcgtacgctcgcgctgtccctgcaagtcaatccggaatcg
cacgcggtgctgacgcgccgcctgagcgcgatggagcgcgacggccagatccgctccgac
gccagcggcttctatgtgcttgccgaccattccgatttcgttgccggccgcgtctccgcg
caccgtgacggcttcggcttcgtgatcccggacgaaccgggcgacgacctgttcctgtcc
gagcgcgagatgcagaaggtgctgcatggcgacaaggtgctggcccgcgtcacgggttac
gaccgccgcggcaggcctgaaggcacgattgtcgaagtggtggagcgtggcacgacccac
atcatcggccgcctgctgaaggataacggcgtgtggatcgtggccccggaagacaagcgc
atcggccaggacatcctgttgacgggcacgcccggcaaggccaagagcggccagatcgtc
agcgtcgaactgacggagcagccggcccgcttcaagcagccggtcggccgcatcgtcgag
gtgctgggcgacatggacgatcccggcatggaaatcgagatcgcggtgcgcaagttcggg
gtgccgcacatgttctcggaaagcgcgctggcgcaggcgaagaagctgcccgatgtcgtg
cacgagaaggactggggcgaccgtgtcgacctgcgcgacgtgcccctggtgacgatcgac
ggcgaggatgcgcgcgacttcgacgatgccgtgtactgcgaacccgtcaagatcggccgc
accaatgcgttccgcctgatcgtcgcgatcgccgacgtgtcgcactacgtgaagccgaac
gatgcgctcgataccgacgcgctggaacgcagcacgtccgtctacttcccgcgccgcgtg
atcccgatgctgccggagaagctgtcgaacggcctgtgctcgctgaacccgaacgtggac
cgcctgacgctcgtctgcgacgccgtcatcacggccaccggcgacatcaaggcctaccag
ttctatccggccgtgatgcactcggccgcgcgcttcacgtacaacgaagtggcggcgatc
ctgtcgaacacgaagggcccggaagcggcgaaacgcgcccacctcgtgccgcacctgcag
aacctgtacgccgtgttccacgcgctgcagaaggcgcgcctggagcgcggcgcgatcgac
ttcgagacgaccgagacgtacatcgtctgcaacccggccggcaagatcgagaagatcatc
ccgcgcacgcgcaacgatgcgcacaagctgatcgaggaatgcatgctggccgcgaacgtg
tgcgcggccgacctgctgctgcgccacaagcaccccggcacctaccgcatccacgcggcg
ccgacgaaagagaagctgacgcaggtacgcgagttcctgaagcaggtgggcttgtccctg
ggcggcggcgatacgccggcggcgcgcgactacgccgagctgatgaagaagatcaaggag
cgccccgatgcgaacctgctgcagacgatgctgctgcgctcgatgcagcaggccgtctac
agcccggacaacatcggccacttcggtctcgcgtacgaagcctatgcgcacttcacgagc
ccgatccggcgctacccggacctgctgacgcaccgcgcgatcaaggccatcctgcaaggc
aagaagtacgagccgaagatcgccgacaagggtgtgctgaacaccaccgtgtcgaacgcg
acgcgccgccagcagctgaaggacaaggccgagggcaaggaaccgaaagcggcccgcgac
atgaccgtgtgggacgcgctgggcgtgcactgctcggccaacgagcgtcgtgccgacgaa
gcgtcgcgcgacgtcgaggcctggctgaagtgctacttcatgcaggacaagctgggcgag
gaattctccggcatcatcaccggcgtgacgacgttcggcatcttcgtgcagctggaccag
ctgttcgtcgaaggcctggtgcacgtgacggacctgggtgccgactacttccagtacgac
gacgcgcgccacgagctgcgcggcgagcgcaccggcaagcgttaccagctgacggatcgc
gtcaccgtgcaggtcgtccgcgtcgacctggagtcgcgcaagatcgacctgcgcctggcg
ccgagcgagacggatgcgatcgcgccgccgcgcggcaagcgtgcctacgaatcgttcgag
tccgacgagttcggtgcggacgacgccaagccgcgccgcggccgttcgggcggcggtcgc
ggtggcgccggcaagggcggcgcacgcggtgcggcgccgggcggcaacgaaggcgccacg
tcccgcaagggcgcggcgcggcgcgacgagccggcaccgcgttccggcccggcgccgtcg
atctcgctgctgccgcaggtcgagtacgaaaagccgaagagccgcacgaaggcggccgct
ccggccaagcgcgccgacaagaagacgacggcgaagaccgccgcgaagtcggctgccaag
gcacccgcgaagtcgccggctgccggcaaggccaagaagaaacgatga
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