Pseudoduganella flava: GO485_29710
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Entry
GO485_29710 CDS
T06346
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mfla
Pseudoduganella flava
Pathway
mfla03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mfla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GO485_29710
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mfla03400
]
GO485_29710
Enzymes [BR:
mfla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GO485_29710
DNA repair and recombination proteins [BR:
mfla03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
GO485_29710
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
Cas3-like_C_2
AAA_25
CTE_SPB4
ERCC3_RAD25_C
SKI
AAA_30
Motif
Other DBs
NCBI-ProteinID:
QGZ42804
LinkDB
All DBs
Position
complement(6867319..6870756)
Genome browser
AA seq
1145 aa
AA seq
DB search
MPFDFTKALPKPGNRFALPALYGSADAYALAQAALHLKSQGRMLAVVVAQAGDGQRLLDE
IPWFAPTLRCHLLPDWETLPYDAFSPHQDLVSERLATLHEIRSGQCDVMLVPATTALVRM
APPSFLAAYTFFFKQGETLDEGALRKQLTLAGYNHVTQVMSPGEYSVRGGLIDLFPMGSA
LPYRLDLFGDTVETIRTFDADTQRSLYPVKEVRLLPGREFPMDEAARTTFRSRWRETFEG
DPSRSMIYKDISNGIASAGIEYYLPLFFEETATLFDYLPDGAALALVGDIDSAIRRFWAD
TESRYKFLKADRERPILPPEAIFLRDEAFYTLAKPHARVAIGKDNDGEPSELSAPVPNVA
VNRHLDDPLTNLRAYLLKFPGRVMICADSAGRRETLQQYFAEFDLHPALVEGYDGFTGSH
QKLALGVAPLQAGFELRLDEPLAFVTETELYAGTGRRVGKKKQEAVTQVESMVRDLSELK
IGDPVVHINHGIGRYMGLTSMDLGVGETEFLHLEYAKDTKLYVPVSQLHVISRYSGGAPE
DAPLHTLGSGQWDKAKRKAAEQVRDTAAELLNLYARRAARQGHAFEYSSHDYERFADSFG
FDETPDQAAAINAVIHDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQVAILAPT
TLLAEQHAQTFADRFADWPVKIAEMSRFRTGKEIANAIKGMADGTLDIVIGTHKLLSEDV
KFTRLGLVIIDEEHRFGVRQKEALKSLRAEVDVLTLTATPIPRTLGMALEGLRDFSVIAT
APQKRLAIKTFVRSEGESIIREAVLRELKRGGQVYFLHNEVETIQNRLAQLTELLPEARI
AVAHGQMHERDLEKVMRDFVAQRYNILLCTTIIETGIDVPTANTIIMHRADKFGLAQLHQ
LRGRVGRSHHQAYAYLLVNDLQGLSKQAQRRLDAIQQMEELGSGFYLAMHDLEIRGAGEV
LGESQSGEMLEVGFQLYTDMLNEAVRALKAGKEPDLAAPLASTTEINLHVPALLPADFCG
DVHERLSIYKRLANCASQDAIDGLQEELIDRFGKLPEATRALIETHRLRLAAATVGIVKI
DAHGEAANLQFMPKPPIDPMRIITLIQKNRHIKLNGQDKLKITANMPDLAARVAQIKNAI
KQLTA
NT seq
3438 nt
NT seq
+upstream
nt +downstream
nt
atgcctttcgactttactaaagccctcccgaaacccggtaaccgcttcgcgctgcccgcg
ctgtacggttccgccgacgcctacgcgctggcgcaagcggcgttgcacctgaagtcacag
ggccgcatgctggcggtcgtcgtcgcccaggcgggcgacggccagcgcctgctggacgag
atcccgtggttcgcaccgactctgcgctgccacctgctacccgactgggaaacgctgcca
tacgacgcgttctcgccgcaccaggacctggtgtccgaacgcctggccaccttgcacgag
atccgcagcggccagtgcgacgtgatgctggtgccggccaccacggccctggtgcggatg
gcgccgccgtcgttcctggccgcctacaccttcttcttcaagcagggcgaaacgctcgac
gagggtgcgctgcgcaagcaactgacgctggccggctacaaccacgtgacgcaggtgatg
tcgcccggcgaatactcggtgcgcggcggcctgatcgacctgttcccgatgggttccgcg
ctgccgtaccggctcgacctgttcggcgacacggtcgagacgatccgcacgttcgacgcc
gacacgcaacgctcgctgtatcccgtcaaggaagtgcgcctgctgccgggccgcgaattc
ccgatggacgaggcggcgcgcacgacgttccgcagccgctggcgcgaaacgttcgagggc
gatccgtcgcgttcgatgatctacaaggacatctccaacggcatcgcgtcggccggcatc
gaatactacctgccgctgttcttcgaagagacggcaacgttgttcgattacctgcccgac
ggcgccgcgctggctctcgtcggcgacatcgacagcgcgatccgccgcttctgggccgat
acggaaagccgctacaaattcctgaaggccgaccgcgagcgcccgatcctgccgccggaa
gcgatcttcctgcgcgacgaggcgttctacacgctggccaagccgcatgcccgcgtggcg
atcggcaaggacaacgacggcgaaccgtccgagctgtccgcgcccgtcccgaacgtggcg
gtgaaccgccacctggacgatccgctgacgaacctgcgcgcgtatctgctgaagttcccg
gggcgcgtgatgatctgcgccgattcggccggccggcgcgaaacgctgcagcagtatttc
gccgaattcgacctgcaccccgcgctggtcgaaggctatgacggcttcacgggctcgcac
cagaagctcgcgctgggcgtcgcgccgctgcaggccggcttcgagctgcggctggacgag
ccattggcgttcgtcacggagacggagctgtatgccggtaccggccggcgcgtcggcaag
aagaagcaggaagccgtcacgcaggtcgagtcgatggtgcgcgacctgtcggagctgaag
atcggcgacccggtggtgcacatcaatcacggcatcggccgctacatgggcctgaccagc
atggacctgggtgtcggcgagaccgagttcctgcacctggaatacgccaaggacaccaag
ctgtacgtgcccgtatcgcagctgcacgtgatctcgcgctattcgggcggcgcgcccgag
gatgccccgctgcacacgctgggctccggccagtgggacaaggccaagcgcaaggccgcc
gagcaggtgcgcgacacggccgccgagctgctcaacttgtacgcccggcgcgccgcgcgc
cagggccatgcgttcgaatattcgtcgcacgactacgagcgcttcgccgacagcttcggc
ttcgacgagacgccggaccaggcggcggcgatcaatgccgtgatccacgacatgacgtcg
ggcaaaccaatggaccggctggtgtgcggcgacgtcggcttcggcaagacggaagtggcg
ctgcgcgccgcattcatcgccgtcatgggtggcaagcaggtggcgatcctcgcgcccacc
acgctgctggccgagcagcatgcgcagacgtttgccgaccgcttcgccgactggcccgtg
aagatcgcggaaatgtcgcgcttccgtaccggcaaggagatcgccaacgcgatcaagggc
atggccgacggcacgctcgacatcgtgatcggcacccacaagctgctgtccgaggacgtc
aagttcacccgcctcggcctcgtcatcatcgacgaggaacaccgcttcggcgtgcgccag
aaggaggcgctgaagtcgttgcgcgccgaggtcgacgtgctgaccctgacggccacgccg
attccccgcacgctgggcatggcgctggaagggctgcgcgacttttccgtcatcgccacg
gcgccgcagaagcgcctggccatcaagacgttcgtgcgcagcgagggcgaatcgatcatc
cgcgaagccgtgctgcgcgaactgaagcgcggcggccaggtgtacttcctgcacaacgag
gtggagacgatccagaaccgcctcgcccagctgacggaactgctgcccgaagcccgcatc
gccgtcgcgcacggccagatgcacgagcgcgacctggaaaaggtgatgcgcgacttcgtg
gcacagcgctacaacatcctgttgtgcacgacgatcatcgaaacgggcatcgacgtgccg
acggcgaacacgatcatcatgcaccgcgccgacaagttcggcctcgcccagctgcaccag
ctgcgcgggcgcgtcggccgctcacaccaccaggcctatgcctacctgctcgtcaacgac
ctgcagggcctgtcgaagcaggcgcagcgccggctcgacgcgatccagcagatggaagaa
ctgggcagcggcttctacctggcgatgcacgacctggagatccgcggcgccggcgaagtg
ctgggcgaaagccagtccggcgaaatgctggaagtgggcttccagctgtacacggacatg
ctgaacgaggccgtgcgcgcgctgaaggcgggcaaggagccggatctcgcggcgccgctg
gcgtccaccaccgagatcaacctgcacgttcccgcgctgctgccggccgacttctgcggc
gacgtgcacgagcgcctgtcgatctacaaacggctcgccaactgcgcgtcgcaggacgcg
atcgacggcctgcaggaagaattgatcgaccgcttcggcaagctgccggaggcgacccgt
gcgctgatcgagacgcaccggctgcgcctggccgcggccacggtcggcatcgtcaagatc
gacgcgcatggagaggcagcgaacctgcaattcatgccgaagccgcccatcgacccgatg
cgcatcatcaccctgatccagaagaaccggcacatcaagctgaacggacaggacaaactg
aagatcaccgccaacatgccggacctggcggcccgcgttgcacagatcaagaacgcgatc
aaacaactgaccgcatga
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