Methyloraptor flagellatus: ABS361_05090
Help
Entry
ABS361_05090 CDS
T10624
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
mflg Methyloraptor flagellatus
Pathway
mflg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mflg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ABS361_05090 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mflg03019
]
ABS361_05090 (rnr)
03016 Transfer RNA biogenesis [BR:
mflg03016
]
ABS361_05090 (rnr)
Enzymes [BR:
mflg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
ABS361_05090 (rnr)
Messenger RNA biogenesis [BR:
mflg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ABS361_05090 (rnr)
Transfer RNA biogenesis [BR:
mflg03016
]
Prokaryotic type
tRNA degradation factors
ABS361_05090 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
RNase_II_C_S1
HTH_IclR
Replic_Relax
HTH_Crp_2
Motif
Other DBs
NCBI-ProteinID:
XBY46814
UniProt:
A0AAU7XGB7
LinkDB
All DBs
Position
complement(1045287..1047596)
Genome browser
AA seq
769 aa
AA seq
DB search
MLAFIAEHPGEAGKRELARAFGIKGAAKVALKRLLKELQGEGILETRRKRLIRAGELPEV
FVCDVTGRDADGDLLATPDEWDEEEHGPAPTVLIVDDRERRRHGTPTAGVGDRLLVRRTE
RGADLPEGVGYAVRIIRVLDKKPAAALGIVRLAPGGARIVPVDKKSKELVVGEADLKDAR
EGDLVALDVVSSSRLGLPRARVREVIGPMASEKAVSEIALHTHNIPHVFPVSVMAEAEAA
EAATMKNREDWRDLALVTIDPPDAKDHDDAVHAEPDTSPDNPGGFIVTVAIADVAAYVRP
GSALDREALHRGNSVYFPDRVVPMLPERISNNLCSLKEKVDRPAMAVRMIFAADGRKKDH
TFHRIMMRSAAKLSYQQAQAAIDGRTDDKTETLLKGVLRPLWAAYAALKRGRDAREPLDL
DLPERKILLKSDGTVDRVIVPERLDAHKLIEEFMIQANVAAAETLEKFRTPLLYRIHDAP
SPEKLEALKDFLATIDMKIGAKGGIKPANFNAILARVAETPRAGLVNEVVLRSQAQAEYN
PVNIGHFGLHLKRYAHFTSPIRRYADLIVHRALIRALRLGNDGLPEALDEKLEGIGAEIS
AAERRAMAAERETIDRLIARWLMDRIGAEFRGRIAGVTKSGLFVRLNETGADGFIPASTI
GDDYYVFDEVSHALVGSRTGETYRLGDAVEVRLVEAQPFAGALRFEMLSEGAFEKPANQR
RDLGFGRGGATGRGGGRGRGPTRPKGGGGSAGKRGTPSRAGSGAKRGRG
NT seq
2310 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgccttcattgccgagcaccccggcgaggcgggcaagcgcgaactggcgcgcgcc
ttcggcatcaagggcgcggccaaggtcgcgttgaagcggctgctgaaggagctccagggc
gaaggcatcctcgagacacgccgcaagcggctgatccgggccggcgaactgccggaagtc
ttcgtctgcgacgtcaccggccgcgacgccgacggcgatctgctggcgacccccgatgaa
tgggacgaggaggagcacggccccgccccgaccgtgctgatcgtcgacgatcgcgagcgt
cgccgccacggcacgccgaccgccggcgtcggcgaccgcttgctggtccgccgcaccgaa
cgcggcgccgatctgcccgagggcgtcggctacgcggtgcgcatcatccgcgtgctcgac
aagaagccggccgccgccctcggcatcgtgcgtctggcgcccggcggcgcccgcatcgtg
ccggtcgacaagaaatcgaaggaactggtcgtcggcgaggcggacctgaaggacgctcgc
gagggcgacctggtcgcgctcgacgtcgtctcgtcgagccgcctcggcctgccgcgcgcc
cgggtgcgcgaggtgatcggcccgatggcctcggagaaggccgtcagcgagatcgcgctg
cacacccacaacatcccgcacgtcttccccgtctcggtcatggccgaggcggaggcggcc
gaggccgcgacgatgaagaaccgcgaggactggcgcgacctcgcccttgtcacgatcgat
ccgccggacgccaaggaccacgacgacgccgtccacgccgagcccgacacgagcccggac
aatcccggcggcttcatcgtgacggtcgcgatcgccgacgtcgcggcttacgtgcgcccc
ggttccgcgctcgaccgcgaggcgctgcatcgcggcaactcggtctatttccccgatcgc
gtcgtgccgatgctgcccgagcggatctccaacaatctctgctcgctgaaggaaaaggtc
gatcgcccggccatggccgtacgcatgatcttcgcggccgacggccgcaagaaggaccac
acgttccaccgcatcatgatgcgctcggccgccaagctctcctaccagcaggcccaggcc
gccatcgacggccgcaccgacgacaagaccgagacgctgctgaagggcgtgctgaggccg
ctctgggccgcctacgccgcgctgaagcgcggccgcgacgcccgcgagccgctggacctc
gacctgcccgagcgcaagatcctgctgaaatccgatggcacggtcgaccgcgtgatcgtc
ccagaacgcctcgatgctcacaagctgatcgaggaattcatgatccaggccaacgtcgcc
gccgccgaaacgctggagaagttccgcacgccgctgctctatcgcatccatgatgcgccg
agcccggagaagctcgaggcgctgaaggacttcctcgccacgatcgacatgaagatcggc
gccaagggcggcatcaagccggcgaacttcaacgccatcctcgcccgggtcgccgagacc
ccgcgcgcgggcctcgtcaacgaggtggtgctgcgctcgcaggcgcaggccgagtacaac
ccggtcaacatcggccatttcggcctgcacctgaagcgctacgcccatttcacctcgccg
atccgccgctatgccgacctgatcgtgcatcgtgcgctgatccgggcgctgcggctcggc
aacgacggcctgccggaagcgctcgacgagaagctggaaggcatcggcgcggagatctcc
gccgccgagcgccgcgccatggcggccgagcgcgagacgatcgaccggctgatcgcccgc
tggctgatggaccggatcggcgcggagttccgcggccgcatcgccggcgtcaccaagtcg
ggcctgttcgtgcgcctgaacgaaaccggcgccgacggttttattccggcctcgaccatc
ggcgacgactactatgtcttcgacgaggtctcccatgcgctggtcggcagccgcaccggc
gagacctaccggctcggcgatgccgttgaagtgcggctcgtcgaggcacaacccttcgcc
ggggctttgcgcttcgagatgctgtcggagggcgccttcgagaagccggccaaccagcgc
cgcgacctcggcttcggccgcggcggcgcgaccggtcgcggcggcggtcgcggccgcgga
ccgacccggcccaagggcggcggcggctcggccggcaagcgcggcaccccgtcgcgtgcc
ggatcgggcgcaaaacgcggtagaggttga
DBGET
integrated database retrieval system
