Marinobacter flavimaris: ACGK9W_01275
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Entry
ACGK9W_01275 CDS
T10818
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
mfli Marinobacter flavimaris
Brite
KEGG Orthology (KO) [BR:
mfli00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
mfli03009
]
ACGK9W_01275 (rlmD)
Enzymes [BR:
mfli01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
ACGK9W_01275 (rlmD)
Ribosome biogenesis [BR:
mfli03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
ACGK9W_01275 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
TRAM
PCMT
TRM5-TYW2_MTfase
Cons_hypoth95
Methyltrans_SAM
MTS
RrnaAD
Methyltransf_11
Methyltransf_15
Methyltr_RsmB-F
UPF0020
Ubie_methyltran
CMAS
Methyltransf_23
PrmA
TehB
MetW
Motif
Other DBs
NCBI-ProteinID:
XKQ61898
LinkDB
All DBs
Position
235597..236946
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AA seq
449 aa
AA seq
DB search
MSRRRRKVLPKEPVRCEIETLSHDGRGIARQDGKTQFVDGALPGETVMAKVVSSRSKFDE
LRTEEVLEAAPDRQTPPCEFADLCGGCSLQHMSGDAQIAFKENTLREHFAHFGGIEPEEW
IEPLRSEESLGYRRKARLGVRYVKARESVLVGFREKRNSFLTDIDRCVVLDPRIGDRILP
LRNMLHDLDAYSRIAQVEVACGDDVAVMVFRNMDDLSTGDREKLIAFGQAHDLHIYLQPK
GPDTVHRIWPESSGRDDERLSYRLEEFDLTMKFHPMDFTQVNAGINRAMVHRAVEWLDVQ
PGERVLDLFCGLGNFTLPLATRGGQVVGVEGDETMVVRGRENAELNGLDNVAFHGADLHG
DFTGQSWAKEGFDKILIDPPRSGAEEICKYLTAFGAQKIVYVSCNPATLARDAGVMARNG
YRLVRAGVMDMFPHTTHVESIALFERDSD
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
atgagcagacgacgcaggaaggttcttccaaaagagcccgtgcgctgtgagattgagacc
ctgagccatgacggccggggtatcgcccgtcaggatggcaagacccagtttgtcgatggc
gcccttccgggcgaaaccgtgatggcgaaagtggtgtccagtcgaagcaagttcgacgaa
ctgcgcaccgaagaggttctggaagccgcgccggatcgccagacgccaccctgcgagttt
gccgacctgtgcggtggctgtagcctccagcatatgagtggcgatgcccagattgcgttc
aaggagaataccctgcgggagcattttgcccattttgggggcatcgaacccgaggagtgg
attgagccactgcgctcggaagagagcctcggctatcgccgtaaggcgcgcctcggggtt
cgttacgtcaaggcccgggagtctgtcctggtggggtttcgggagaaacgcaacagtttc
ctgaccgacatcgaccgttgtgtggtgctggatccccgcattggcgaccgcatactgccc
cttcgaaatatgctgcacgatctggacgcctacagccgaatcgcccaggtggaagttgcc
tgtggcgatgatgtggcggtaatggtgttccgcaatatggatgacctgtccactggtgac
cgggagaagctcattgccttcggccaggctcacgatttgcatatctacctgcagccaaaa
gggcccgataccgttcatcggatctggcccgagtcctctggccgggatgatgagcgactg
agctacaggctggaagaattcgacctgaccatgaaatttcatcccatggactttacccag
gtcaatgcaggcattaatcgcgcaatggtacacagggccgtggaatggctggatgtccag
cctggcgagcgagtcctggatctgttctgcggtctggggaatttcactctgccgctggcc
acgcgaggcgggcaggttgttggcgtggaaggcgacgagaccatggtcgtacggggccgg
gaaaacgcggaactaaacggtctcgacaatgtcgcttttcacggtgccgacttgcacggt
gacttcacgggccagagctgggccaaagaagggttcgacaagattctgattgatccgccc
cgttccggtgccgaggagatctgcaagtacctcacggccttcggggcacaaaagatagtc
tatgtctcctgcaacccggccaccctggcgcgcgacgcaggcgtaatggcgcgcaacggc
tatcgactggtgcgcgcaggtgtgatggacatgtttccccacaccactcacgtggaatcc
atcgcgttgttcgaacgggattccgactga
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