Marinobacter flavimaris: ACGK9W_15850
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Entry
ACGK9W_15850 CDS
T10818
Name
(GenBank) ribonuclease R family protein
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
mfli Marinobacter flavimaris
Pathway
mfli03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mfli00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACGK9W_15850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mfli03019
]
ACGK9W_15850
03016 Transfer RNA biogenesis [BR:
mfli03016
]
ACGK9W_15850
Enzymes [BR:
mfli01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
ACGK9W_15850
Messenger RNA biogenesis [BR:
mfli03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ACGK9W_15850
Transfer RNA biogenesis [BR:
mfli03016
]
Prokaryotic type
tRNA degradation factors
ACGK9W_15850
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
IFT20
Motif
Other DBs
NCBI-ProteinID:
XKQ60573
LinkDB
All DBs
Position
3381841..3383826
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AA seq
661 aa
AA seq
DB search
MLNADALSQLRQLKSDIKDNKVVFPGTVKATNGRFGFVALDEGRDVFLPPEEMQKVLPGD
RVNVTEQEVEKGKTQGVVDELLETRLNTFVGRYLVKGKGHFVVPETPGINRWIFIPPKER
MNAQQDDYLYCQIHKHPIKDGKGQAKVLRVIGKAGEPGIERSFTLATFDLADTWPDAVRT
QADSLSESDIESREAGREDRTDRPYVTIDSPGTQDMDDALLAEPNATGWTLSIAIADPTA
VIETDSPAEQEAFNRATAIYFPGEPLPMLPDSISTRLCSLMPDVKRLALVCDLQVNNDGS
LGDYSFHQAVIQSKGKLSYELVSNLIEGREDDEIKALPDDVANSLDQLHQAATALRKWRS
EHALLSGDRPEFRLRLDENKRIRLIEPSVQNEAHRLVEECMVAANRCAADFLANQTAGLF
IQHPGLRDDRADNIRALIDSHAPHLSGVDAHQAEGFRKLMKETDALEAEVPVKAILSRQL
ARAELSFKPAPHQGMGLDAYTTFTSPLRKFSDFYVHRLIKSALWDTPMKALSEDQLEALQ
AAQIRARQAANSLEAWLKSDFAKTLGEEPMSGVISRTVPAGFFVRLDANGLEGFVSCKDL
DGKYSFDPVTLRLIHNKNGRIFQLEQPVTVSFAGVDEERRQINFKLVEAQEIPTGTGSDD
G
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atgctcaatgccgacgccctcagccagttgcgccagctgaaatcggatatcaaggacaac
aaggtggtttttcccggaacagtcaaagccaccaatggccgcttcggatttgttgcgctc
gacgaaggccgggatgtcttcctgccacccgaggaaatgcagaaggtgctgcccggggac
cgggtgaatgtcaccgagcaggaggttgagaaaggcaaaacccagggtgttgtggacgaa
ctgctggaaacccgcctgaacacctttgttggccgttacctggtgaaaggcaaaggccat
ttcgtggtgcccgaaaccccgggcatcaaccgctggatcttcattccccccaaagagcga
atgaacgcccagcaggacgattacctctactgtcagattcacaagcatccgatcaaggat
ggcaagggccaggccaaggtactgcgggtaatcggcaaggcgggagaacccggtattgaa
cgctctttcaccctggctacctttgatctggccgacacctggccggacgcggtgcgtaca
caggccgacagcctcagtgagagtgatatcgaatcccgggaagccgggcgggaagaccgc
acggatcgcccgtatgtgaccatcgacagcccgggcacccaggacatggacgatgccctg
ctggccgaacccaacgccaccggctggacgctgtcgatcgccattgccgacccgaccgct
gtgatcgaaaccgacagccccgcggagcaggaggcgttcaatcgcgccaccgccatttac
ttcccgggcgaacccctgcccatgctgcctgacagcatcagcacccgcctgtgctctctg
atgccagacgtgaagcggctggctctggtatgtgatcttcaggttaacaacgatggcagc
ctgggcgactacagctttcaccaggcggttatccagtccaagggcaagctcagctacgag
ctcgtctcaaacctgatcgaaggtcgggaggacgatgagatcaaggcacttccggacgac
gttgccaacagcctggaccagttgcaccaggcagcgacagcactcaggaaatggcgcagt
gaacatgcgctgctgagcggcgaccggccggaattccgcctccggctcgatgaaaacaaa
cgcatccggctgattgaaccgtccgtccagaatgaagcccatcggctggtggaagagtgc
atggtcgccgccaaccgctgcgccgcagacttcctcgccaaccagactgcagggttgttt
atccagcaccccgggctacgggatgatcgcgccgacaacatccgggcactgatcgacagc
cacgcaccacatctctcgggggttgatgcccatcaggccgaaggcttccggaaactgatg
aaagaaaccgatgccctggaagccgaggtgccggtcaaagccatactgtcccgccagctg
gcccgggccgaactgagcttcaagcccgcgcctcaccagggtatgggcctggacgcctac
accacgtttacttcgccactgcgcaagttctcggacttctatgtccaccggctgatcaaa
tcggcactgtgggatacccccatgaaggccttgagcgaggatcagctggaggctctgcaa
gcagcccagatccgtgcccgccaggcggcaaacagtctggaagcctggctcaagagtgac
tttgccaaaacactcggcgaagaacccatgagcggtgtgatcagccgcacggtgcccgcc
ggtttctttgtacggctggatgccaacggattggaagggttcgtcagctgcaaggatctg
gatggcaaatacagctttgaccccgttactcttcgcctgatccacaacaagaacggccga
atcttccagctggagcagccggtaacggtaagctttgcaggcgtggacgaagagcgcagg
cagatcaatttcaagctggtggaagcacaggagatcccgaccgggaccggctccgacgac
ggttga
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