Miscanthus floridulus: 136449520
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Entry
136449520 CDS
T10264
Name
(RefSeq) LOW QUALITY PROTEIN: protein RST1
KO
K27498
focadhesin
Organism
mflo Miscanthus floridulus
Brite
Messenger RNA biogenesis [BR:
mflo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
136449520
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Gene cluster
GFIT
Other DBs
NCBI-GeneID:
136449520
NCBI-ProteinID:
XP_066305657
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Position
5:12214443..12228365
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AA seq
1831 aa
AA seq
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MAMASSTTSSTAALSRLVDRTRVPDPTLQRHAVAAFFRHLLSLPAPLPAAAHDAASALLA
SPHPAVAAHAAASLARLAASRPDLLPSGLALPLLIAPLAASPSPRLASCLVKAFSALAAC
ALRSGSRFPPHDHPFVQALASGADGSRAELTRQAARMVAEEVDWVVGFLRPFVMFSVVRK
GDATFARDLIGALAAAAVAAGKAGVAIPVLKMLEDSMLHFGRGDDQEVRLWLSSAECLVD
AYVVLLRKLVHAQMPTYDAQASSATLMGTLISQCSFHQKFLGIDSTVFGLSKHLFSVQRD
LGLCYLPEISVVLSSLSYSLTGLEFEHEQLAGLKLLSFLIDWKYENVRDSKERTQQVSVE
LLCVLAVINLTISPSKSVKAVAYHVLSRFSLFVLDLPASHSSEEQDISTSYHISKPALLL
PKLLHHLWSKPSSSGFTFMKYTVTKASPDSGQSDLETSYWTHQINAYLTVLRREKHTLDA
SSSKKTSSVAISSLISSVASVLVMHPKLGTSAAESLAMLGASDPKLGMPLFVAILYYSKI
LCSSGNFSTEISLSLLESLPSLAIHGFVLPLALQWIAPMLKRDSNSVLYAIAVRLLCKIW
AITDWAFPNLQVVLDPENFSNFISDREISASIATSIRDVCKQNPDRGVDLILSVSFCIES
RDSVVQALGLESLSYLCEADVVDFYTAWKVISKQVLDYYVEPAVAHSLCVLLRCGAMDAE
AYSGISSNLIRTLWRIGTSKKNNPEPLWDKARGTAFHSLSNYKVSLIQDAIPDFWKLNYE
FFTNEHNLAVLKAMEHLQDEIIKYEHINRRRVTTDKRAAVHKFEKLLEVFPQAVFKGMLS
HHQLPGAALLTLNFTPKDILNEGKPKDLPRVHSAFEQAFVEIAESMYMSRNIAVALLALQ
SWKSFVSNWMQAVLALLDIKEPSKLNKAMKAANDIFKILCDQVPVSTPQVAVNISLVIGA
LCLIVPPTAHLVVSSASDFLLKWLLQYEHEHQQWSAALSLGLIFNCFHPTDKKSRLQVIN
GFLEVISKTESCLVKGACGLALGYACHGILTRAHNATDSEVEAITQLNERASVEDILHAL
VTSLIQLCPSSCYSLKKLSIYGISSMGGMEENIHSFSDDPWAVAGLVIGLGNSVVALYRL
GAYEAVTEVKGILISWIPNVDSNSALFDEIDSISLCMGSCLALPSVVVFCQKVELLNEDL
DALFNRYTSLASELLSLNKSGIIFQNLLMAICIGAGSFLSSILDDGVHAMEFNGVKSLLD
TLRHIYTHPFPPLVHLGGMFGVVNAFGAGAGDLTGVFSKPMTSQIKHEESSFVRGPLLTS
PVGETLSTSMIQEIFFLAKDAKDKHIRDYAAWAISFLRSRWSKNQNQILYEDNGSNRSSG
DRDQASSFSEQSLVWNLSLWLSDLKFEKSGDVVPISTVGTVLKCLSRAPRLPTTDWGAIV
RRCIKVEAQIPHKLTNQEDPKLLKEACLYLTLAHAAHISPLLQFLDDLTDILRFQRLDIN
VQSILLQHLSHLMKLFSDSRLDKLYEDFTEYLYSPTSSYLNYSSEQRSMLRMSFWEGIYM
CLVEVSEESGGFXSFIKKCIECLLPLLTLHSDGQPEFMKEWSAAIRCLANAQKNWLDDML
QIRNTALVNEEGHVDVAKKIILRARLCATGCGSAHELGNIKTAILCTKADGVWWSVLVEI
TGALNSAENSIKRQWLLDALDIGCVTAHPSTVLRFVGLLCGSCCIYMPLLVVNSINVLSD
LPVTLPSFLSTSVSDDFRNSVADRLWLLTTNIYTWAEELAHGHSQPVHDHIHRSEAEIAT
FLANILRSTCIAVGDYLPVDKQLKLANLEAL
NT seq
5496 nt
NT seq
+upstream
nt +downstream
nt
atggccatggcttcctccaccacctccagcacggcggcgctctcccgcctcgtcgaccgc
acccgggtcccggaccccacactgcagcgccatgcggttgcggccttcttccgccacctc
ctctccctacccgcgcccctccccgcggccgctcacgacgccgcctcagccctcctcgct
tcgccccaccctgcagtcgccgcgcacgctgcggcctcgctcgcccgtctcgccgcctcc
cgccccgacctcctcccctcgggcctcgccctcccgctcctcatcgcgcccctcgcggca
tccccgtctccccggctcgcttcctgcctcgtcaaggcattctccgcgctcgcagcctgc
gccctccgctccggctctcgcttcccgccccacgaccaccccttcgtccaggcgctcgcg
tccggggctgacggctcgcgcgcggagctgacgcggcaggcagccaggatggttgccgag
gaggtggattgggtggtcgggtttctgaggccgttcgtgatgttctccgtggtgaggaag
ggggacgccacatttgcgagggatttgatcggcgcactggccgcagcagccgtggcggca
gggaaggctggtgtcgcgatcccggttctgaagatgctcgaagacagcatgctgcatttc
ggccgcggggatgatcaggaagtgcggctatggcttagttctgcggagtgcttggttgat
gcttatgtggtgctactgaggaagttagttcatgctcaaatgccaacatatgatgctcaa
gcaagtagtgcgacattgatgggaacactcatatcacagtgttcatttcatcaaaagttt
ctgggaattgattcaacagtttttgggttatcaaaacatctattctcagtgcaaagggac
cttggattatgctatctacctgagatttctgttgtccttagctctctttcttactctctc
actgggctagagtttgaacatgaacagctagctggcttgaaacttctgagctttttgatt
gattggaaatatgaaaatgtgcgtgacagtaaagaacgaacacaacaggtcagtgtggag
cttctttgtgttctggcagttatcaaccttaccatttcgccatccaaatctgtgaaagca
gtggcttatcatgttctgtcaaggttcagcttgtttgttttagacttgccggcttctcat
tcatcagaggaacaagatatttcaaccagttaccacataagcaaacctgcacttcttctt
cccaaacttctgcatcatctatggtctaagccatcttcatcaggcttcacttttatgaag
tacacagttaccaaggcttcacctgattctggtcagagtgacttggaaacaagttattgg
actcatcaaataaatgcctatctgacagtccttcgcagagaaaagcatacattagatgcc
tcgtcttcaaaaaagacatcttcagtagccatatcatctctgataagctctgtagcatct
gttttggtaatgcatccaaaacttggtacttctgcagcagaatctttggccatgcttggc
gcatcagacccaaagttgggtatgccactgtttgtagctatcctctactatagcaagatt
ctatgcagcagcggtaatttttcaacggaaatctcgctcagtttgctagagtcattgccg
tcacttgctatacatggttttgttcttccactagctctgcaatggatagcgccaatgctt
aaaagggactcaaattcggttctgtatgctatagctgttcgattactctgcaagatatgg
gctataactgattgggcatttccaaacttacaagtagttctggatcctgagaatttttcc
aatttcatctctgacagagagatctctgcaagtattgccacatcaatacgcgatgtttgc
aagcagaacccagatagaggtgttgatctaatattatctgtctctttttgtattgagagt
cgtgattctgtggttcaagctcttggcctggagagcctctcgtacctttgtgaagcagat
gtggttgatttctacacagcgtggaaagttatatcaaagcaggtgcttgattattacgtt
gagcctgctgttgctcacagtttgtgtgttctgttgaggtgcggagcaatggatgctgaa
gcatattctggaatatctagtaacctgataagaacattgtggagaattggaacatccaag
aaaaataatcccgaacctctctgggataaagcaagaggaactgcttttcactccttgtcc
aactacaaggtctcacttattcaagatgctattcctgatttctggaaactaaactatgag
ttctttacgaatgaacataatttggcagttctcaaggccatggagcaccttcaagatgag
atcatcaaatatgagcacataaatcgtcgtcgagtgactaccgataaaagagctgcagtg
cataaatttgagaagctactggaggttttccctcaggccgtatttaaagggatgttatct
catcatcagttgcctggtgctgctcttttaactctcaattttactccaaaggacatactt
aatgaagggaaacctaaggatttgcctagagttcattctgcttttgagcaagcttttgtg
gaaattgctgaatctatgtatatgtcaagaaacatagcggtagctcttcttgccttgcag
tcatggaaatcatttgtttccaactggatgcaagcagttttggcattgcttgacattaaa
gagccgtcgaagttgaacaaagcaatgaaagccgctaatgatatatttaagattctgtgc
gatcaagttccagtatctactcctcaagttgcagttaacatatctcttgttattggagca
ctgtgcttgattgttccaccaactgctcatttggtagtatcttcggcatcagattttctt
ttaaaatggttgcttcaatacgagcatgagcaccagcaatggtcagcagctctctctctt
ggactaatattcaattgttttcatcctacggacaaaaagagcagacttcaggttattaat
gggtttcttgaggttatctcaaaaactgaaagctgtcttgtaaaaggagcttgtggactg
gcattaggctatgcttgccatggtattttgacaagagcacataatgctactgattcagaa
gtagaggctattacacaactcaatgagcgtgcatcagttgaggatattcttcatgctttg
gttacttcgttaattcagctatgtccatcctcatgctattctctgaagaagcttagtata
tatggaatatcctccatgggagggatggaagaaaatattcatagcttcagcgatgatcct
tgggctgtcgctgggcttgttattggtctgggaaactctgttgttgctctgtatagactt
ggagcttatgaagcagttactgaagtcaagggcatattgatatcatggataccaaatgtt
gattcgaactctgcattatttgatgaaatagattcaatatcactatgtatgggttcatgt
cttgctcttccatctgtcgtggttttttgccaaaaagtggagctgttgaatgaagacttg
gatgcattgttcaatcgctacacttctttagcttctgagctcctgagcctgaataaatct
gggattatctttcagaatttgttgatggcaatctgtattggtgctggatctttcctgtct
tctatattggatgatggggtgcatgctatggaatttaatggtgttaaaagccttctggac
actctcagacatatatatacccacccctttcctccccttgttcatttgggaggcatgttt
ggtgtagtcaacgcttttggtgctggcgcaggggatcttactggggtgttttcaaagcct
atgacttctcaaatcaaacatgaggagtcatcttttgtgagaggtccattactgacaagc
cctgttggtgagactctgtcaacatcaatgattcaggaaatattttttcttgctaaggat
gctaaggataagcacatacgagattatgctgcatgggctatttcatttctcagaagcagg
tggtcaaagaatcagaatcagattctttatgaggacaatggttctaatagaagttctggt
gatcgtgatcaagcttcaagtttttctgaacaaagcttagtttggaacttaagtctctgg
ttgagtgatctaaaatttgaaaagtctggtgatgtggtgccaataagtacagttggaaca
gttttaaaatgcctttccagagctcctcgattgccaactacagactggggagctattgta
cggcggtgcattaaagttgaggcgcagattcctcataagttaaccaatcaggaagatcct
aagttactaaaggaagcatgcttatatttgactctagctcatgctgctcacataagtccc
cttctgcagtttttggatgatctgactgacatactcagattccagagattagatataaat
gttcagtctattttgctccaacatttgtcacacctaatgaagctcttctctgattcaaga
ttggataaactttatgaggattttactgaatacttgtattcccccacctcttcatacttg
aattactcatctgaacagagaagcatgctaagaatgtcgttctgggaaggcatttatatg
tgcctggtggaggtttctgaagaatctggtggttttnnttcattcattaaaaaatgcatt
gagtgcttgttgcctcttttgacactccacagtgatggtcaacctgaattcatgaaagag
tggtctgctgctatcaggtgtcttgccaacgcccagaaaaattggctggatgatatgctg
cagattcgcaatactgccttagtcaatgaagaaggacatgttgatgtggcaaaaaagatt
atcctcagagcaagattgtgtgcaactggttgtggttcagcacatgagctgggaaatata
aagacggcaatattgtgtacaaaagctgatggtgtctggtggagtgtccttgtagagatc
actggagccttaaactcagccgaaaacagcatcaaaaggcagtggcttctggatgcatta
gacattggctgtgttacagctcatccctcaacggtgctgcgttttgttggcttgttatgt
ggtagctgctgcatctatatgccgcttctcgttgttaattcgataaatgtactgagtgac
ttgcctgtcaccctgccttcctttctctccaccagcgtttcggatgatttcaggaactct
gtggcagacaggctatggttgttgaccactaacatctatacttgggctgaagaattggct
cacggacacagccaacctgtacatgatcatattcatagaagtgaagctgagattgcgact
tttttggccaatattctgcgctctacatgcattgcagtcggggactacctacctgttgat
aagcagctaaagcttgcaaatcttgaggcgctctaa
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