Miscanthus floridulus: 136450014
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Entry
136450014 CDS
T10264
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2-like isoform X1
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
mflo Miscanthus floridulus
Pathway
mflo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
136450014
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mflo03019
]
136450014
Messenger RNA biogenesis [BR:
mflo03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
136450014
U7-dependent histone pre-mRNA processing factors
136450014
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Motif
Other DBs
NCBI-GeneID:
136450014
NCBI-ProteinID:
XP_066306359
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All DBs
Position
5:64573868..64582043
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AA seq
701 aa
AA seq
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MHSIFLSKIYTQQVAPTVDAVLLSHPDMMHLGALPYAMKHLGLSAPVYATEPVFRLGLLT
MYDHFLSRWQVSDFDLFTLDDVDAAFQNVVRLKYSQNYLLNDKGEGIVIAPHVAGHLLGG
TVWKITKDGEDVVYAVDFNHRKERHLNGTVLGSFVRPAVLITDAYNALNNQGYRKKQDQD
FIDSLIKVLATGGSVLVPVDTAGRVLELLLLLDTYWDERRLQYPIYFLTNVSTSTVDYVK
SFLEWMGDQIAKSFESSRANAFLLKKVTLIINKEELEKLGDAPKVVLASMASLEVGFSHD
IFVEMANEARNLVLFTEKGQFGTLARMLQVDPPPKAVKVTMSKRIPLVGDELKAYEEEQE
RIKKEKALKASLVKEEELKASLGSIAKASDPMVIDASSSRKSANAGSHFGGNTDILIDGF
VPPSTSVAPMFPFFENTAEWDDFGEVINPDDYMMKQEEMDNTLMLGPGDGLDGKIDDGSA
RLLLDSTPSEVISNEMTVQVKCSLVYMDFEGRSDGRSVKSVIAHVAPLKLILVHGSAEAT
EHLKMHCAKNLDLHVYAPQIEETIDVTSDLCAYKVQLSEKLMSNIISKKLGEHEIAWVDA
EVGKEDEKLILLPPSSTPPPHKPVLVGDLKLSDFKQFLENKGWQVEFAGGALRCGEYIMV
RKIGDSSQKGSAGSQQIVIEGPLCEDYYKIRELLYSQFYLL
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
atgcactccatttttctttccaaaatctacactcagcaggttgcaccaactgtagatgct
gttcttttgtcacatcctgacatgatgcatctaggagctttgccttatgctatgaaacat
cttgggctctctgcaccagtttatgcaacagaacccgtgtttagacttggccttttgacc
atgtacgaccatttcctatctcgatggcaagtttcagactttgacttgtttactttggat
gatgttgatgctgcattccaaaatgttgtgagattgaaatactcacaaaattaccttctg
aatgataaaggtgaagggattgttattgctccacatgtggctgggcatcttttggggggg
acagtgtggaagatcacaaaagacggggaggatgttgtgtacgctgttgacttcaaccat
cggaaagagaggcatttgaatggcaccgttcttggatctttcgtgcggccagctgttctg
ataaccgatgcttacaatgctttgaacaatcaaggttatagaaaaaagcaagatcaagat
ttcattgattcattaattaaagttctagcaactggtggaagtgtgctagttcctgttgat
acggctggtagagtgttggaacttcttttgttattggacacgtactgggatgaacggcga
ttgcagtaccctatctactttctaacaaatgtgtcgacaagtactgttgactatgtcaag
agttttcttgaatggatgggtgatcagatagcaaaatcttttgaaagcagtagagccaac
gccttcttgttaaaaaaggtcacgctgataattaacaaagaagaacttgagaaattggga
gatgctccaaaggtggttctagcatccatggcaagtttggaggttggcttttctcatgac
atatttgttgagatggcaaatgaagcaagaaatctagtgctctttactgagaagggacag
tttgggacactggctcgaatgctccaagtggacccaccccctaaagctgtaaaggtcact
atgagcaagcgcattcctttggtgggtgatgagctaaaggcttatgaagaagaacaggaa
cggataaaaaaagaaaaagcgctaaaggctagccttgtcaaagaagaggagctgaaggct
tctcttggatcaattgcaaaggcttctgacccaatggtcattgatgcaagctcatctcga
aaatctgcgaatgctggttcacattttggtgggaacactgatattctcattgatggattt
gtacctccttcaaccagtgttgctccaatgtttcccttttttgaaaacactgctgaatgg
gatgactttggtgaggtcatcaaccctgatgattatatgatgaaacaagaagaaatggat
aatactctgatgcttggtcctggagatggtttagatggtaagattgatgatggctcagca
cggctgcttcttgattcaacaccctcagaagtcatttccaatgagatgactgttcaagtg
aaatgctcattggtttatatggactttgaaggtcgctctgatgggcgttctgtaaaatca
gttattgctcatgtggctccattgaaacttattctggtgcatggatcagcggaagcaact
gaacatttgaaaatgcattgcgcaaagaatttagacttgcatgtttatgctcctcagatt
gaggaaacaattgatgtaacatcagatttatgtgcttataaggtccaactttcagagaag
ttaatgagtaacatcatttctaagaagttgggtgagcatgaaattgcttgggtggatgca
gaagttggaaaagaagatgagaagcttattttgctccccccatcatcaacaccaccaccc
cacaagccagttcttgtgggtgatctaaaattgtccgattttaaacaatttttggaaaat
aaaggctggcaggttgaatttgccggaggtgctttacggtgtggcgaatacatcatggtg
cgcaaaattggagattctagccaaaagggcagcgcagggtctcagcagatcgtcattgag
ggcccactctgtgaggactattacaagatcagggagcttctgtactcgcagttctacttg
ctgtga
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