Miscanthus floridulus: 136450313
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Entry
136450313 CDS
T10264
Name
(RefSeq) uncharacterized protein isoform X1
KO
K06100
symplekin
Organism
mflo Miscanthus floridulus
Pathway
mflo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
136450313
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mflo03021
]
136450313
03019 Messenger RNA biogenesis [BR:
mflo03019
]
136450313
Transcription machinery [BR:
mflo03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
136450313
Messenger RNA biogenesis [BR:
mflo03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
136450313
U7-dependent histone pre-mRNA processing factors
136450313
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
Motif
Other DBs
NCBI-GeneID:
136450313
NCBI-ProteinID:
XP_066306811
LinkDB
All DBs
Position
5:complement(99627802..99646165)
Genome browser
AA seq
1292 aa
AA seq
DB search
MEFGADGARWPQPRGDAAEAPPPPGDRGEIASPRFDSSRALRLLRELDTNVTEDLVVLMP
NLLSFLKHDDSAVVKKSIARGTNLFAAVLEEMTLQVNKCGKLETWLEDMWAWMKQFKDAV
CGVMHEPGPIATKLLALKFIETWILCCAPQANSDQTQPTEGKNWRFDTSRLSQFHPSLDP
AVLEADAHRALLLLLDILRTAYAHRGSFLVGTINSVAAVVKIRPIYYDRVLPVLLDFDPG
LETAKGAHSASLRYAVRAAFLGFLRSPHQAMIESKDILVRRLRVLSPGEAMEQNIRQAEK
MSRNIERASRAIKDESTSWEMPYGDTNRKKPAARSSDILTTSDGIAKRARFDMSATSNLP
VLGSSEYSDMQADNGSSVGHSSDPAILNNDVSPVEKMIEMIGALLAEGERGAESLGILVS
TVEADVMADIVIETMKHLPEASFHLATNNGVQQLNFKYSSGLVTQNLPANSDSALFAAKS
TPTADGVSISPSDAFVMTSVHDAKRDPRRDPRRLDPRQIVSPSAVNSIQVKMETNSVHQT
NNLSNTLYSNSGKAENYSDYSGDLQKNEDEQHSASQPNQTIGNDKLELLDVATEPEPTSE
VEAPLDVWIHSSDVDEDMVKSMSSEVISLDESDSMDLEVDPFLPAPEASTPEDTNHDLPV
ITSQLELSEKGKISINKLAIGRILEDYKKNSLNARFSLLAHLIAQSADDDNIMDLIQGHI
IFHSRDQKGYELAMHVLYQLQSISVANSPESTSTSKHYEKFFISLARSLIDSLPASDKSF
SKLLCDAPYLPESSFRLLEDLCMSEDNSQQLKDGDGDRVNQGLGTVWSLILGRPPLRHVC
LDIALKCAAHSQDEVRGKAVRLVAKRLYDLKYATEKIEQFAIESLVAVANEHTVDADINL
KSLKESTAEIEVGSQGTSVSGSQIPDTEFSENDPFKTSSVSPKQSAVSVSEAKRRTSLFF
ALCTRRPSLLQHLFDVYGRSPKVVKQCIHWHMPNLIRNLGPSCPEMLNIIHNPPEGSEHL
ITLTLQTLTEDSNPSADLVAAVKQLYNTKLKDASILIPLLPSFPKEEVLPIFPRLVDLPL
ERFQDALARILQGTAHTGPALTPAEVLIAIHDINPEKDKVALKKVTDACTACFEQRTVFT
QQVLEKSLNQLVDRIPIPLLFMRTVIQALDAFPALVDFVMGILSRLVNKQIWKMPKLWVG
FLKLSFQTQPRSFDVLLQLPPPQLEFMLNKYPNLRTPLSSFVNQRNMHNTLPRQILNILG
FLSEPQQAPMTFVPATLQTADATTSLPGATLM
NT seq
3879 nt
NT seq
+upstream
nt +downstream
nt
atggaattcggagcagacggcgcccggtggccgcagccgcgaggcgatgccgccgaagcg
ccgccgccgccgggagaccgcggggagattgcttcgccccgcttcgattcgtctcgtgcc
ctaagattgctgagagagcttgacacaaatgttacagaagatttggttgtgctgatgcca
aatttgctgtcatttttgaagcatgatgattctgcggttgttaagaaatctatagctagg
gggacaaatttatttgctgctgtattggaagagatgacactacaggttaacaagtgcgga
aaacttgaaacttggcttgaagacatgtgggcttggatgaagcagttcaaagatgcagtc
tgtggtgtgatgcatgagccaggccctattgcaactaaactacttgctctaaagttcatt
gaaacatggattttgtgttgcgcacctcaagccaacagtgaccaaacacagccaactgaa
ggaaaaaactggagatttgatacttcgcgattatctcaatttcatcctagccttgatcct
gctgttttggaagctgatgcacatagagctctcctcctcctcttggatattcttcgaaca
gcttatgcccatcgagggtccttcctagttggcaccattaattctgttgcagcagttgta
aagatccgaccaatttactatgaccgcgtgttgccagtgttgcttgattttgaccctggc
ttggagactgcaaagggggcacattcagcaagcctgcggtatgccgtaagagcagctttt
ttggggtttctacggagtcctcaccaggcaatgattgagtctaaagacatattagtaagg
cggctgcgtgttctcagccctggtgaggcaatggaacaaaatattaggcaggcagagaag
atgtctagaaatatagagcgtgcttctcgtgctatcaaggatgagtctacatcatgggag
atgccttatggagatactaatcggaagaaacctgctgcccgatcaagtgatattcttact
acgtctgatggcatagctaagagagcaagatttgacatgtctgccacttcaaatctgcca
gttctgggatcctctgaatattctgatatgcaggctgacaatggttccagtgtgggtcat
tcgtctgatccagccatattgaataacgacgtgtctcctgtcgagaagatgattgaaatg
attggtgctttacttgctgaaggagaaagaggagctgaatccttgggtattcttgtgtca
acagtagaggcagatgtcatggctgacattgtgatagaaacaatgaaacatctaccggaa
gcttcatttcatttggcaacaaataacggtgtccagcaactgaattttaaatattcctct
ggtctcgtaacacaaaacctaccagccaattcagactctgcactgttcgctgcaaaatcg
acacccacagcagatggagtcagcatatcaccatctgatgcctttgttatgactagtgtt
catgatgctaagcgtgatccaagaagggaccctcgtcgcctcgatccacggcagatagtt
tcaccttctgctgtaaattcgatacaggtgaagatggaaaccaatagtgtgcatcaaaca
aataatctgtcgaacacactctactccaattctggaaaggctgaaaactattcagactat
tcaggagatttacaaaaaaacgaagatgaacagcactcagcttctcaacctaatcaaaca
attggcaatgataagttggagcttctggatgttgccactgaaccggagccaacatctgaa
gtcgaggcaccactggatgtctggattcattcttctgatgttgatgaagatatggtgaaa
tccatgtcttcagaagttatttcccttgacgaatctgatagtatggatttagaggttgac
ccctttttaccagctccggaggcatcaacaccagaggacaccaatcatgacttgccagtt
attacgtctcagttggaattaagtgaaaaagggaaaatctcaattaacaaactagccatt
gggcggatactcgaagattacaagaaaaatagtctcaatgccagattttctttgcttgcc
catttgattgcgcagagtgctgatgatgataacattatggatttgattcaggggcacatt
atctttcactctcgtgatcagaaggggtatgaactggcaatgcatgtgttgtatcagcta
cagagtatcagtgttgctaattcaccagaaagcacctccacttctaaacattacgagaag
ttctttatatcacttgcgaggtccttgattgattcactgcctgcttcagacaagtctttt
agcaaacttttatgcgatgcaccatatctacctgagtcttcgtttagattactggaggat
ctttgcatgtcagaagacaacagccaacaattaaaggatggggatggggaccgtgttaac
caaggcctgggaactgtatggagccttatcttgggtcggcctccgcttcgccatgtttgc
ttggatattgctctgaagtgtgctgcccactctcaagatgaagtcaggggaaaggcagtt
agattggttgcaaaaaggctctatgatctaaaatatgcaacagaaaaaatagagcagttt
gccatagagagtcttgtggcagttgctaatgagcatactgtggacgcagatattaatttg
aaatccttgaaagaatctacagctgagattgaggtaggcagtcagggaacttcagttagt
ggctcccagatcccagatactgagttttctgaaaatgacccattcaagacatcatcggtt
tcaccaaaacagtcagcagtatctgtatctgaggcaaaacgccgtacttctttgttcttt
gcactttgcaccaggagacctagtcttcttcaacatctgttcgatgtttatggaaggtct
ccaaaagttgtcaagcagtgtatccattggcatatgcccaatcttataagaaatctgggg
ccctcatgtcctgagatgctgaacataattcataatccacctgaaggcagtgaacatctt
attaccttgacactgcaaacattgaccgaagattcaaatccttcagctgacctagttgct
gctgttaaacaattatataataccaagctgaaggatgcatctattctcatccccttactg
ccttcatttccaaaggaggaggtattgcctatatttcctaggctagttgatctcccgctt
gagagattccaagacgcacttgctcggatattgcagggaactgctcatactggtccagca
ttgactcctgctgaagttctgatcgcaattcatgatattaaccctgaaaaagataaagtt
gccctaaagaaggtcacggatgcttgcacggcttgctttgagcaacgtacggtatttact
cagcaggttttggagaagtcactcaatcaattggttgacagaataccaattcctcttctt
tttatgagaacagttattcaagcgcttgatgctttccctgctttggttgattttgtcatg
ggaatactctccaggctcgtcaataaacagatatggaaaatgccaaagctatgggttggg
tttttaaaattgtcattccaaactcagccacgttcttttgatgtcttattacagctacct
ccaccacaacttgagtttatgttgaataaatatcccaatcttcggacacctctttcttcc
tttgttaatcagcggaatatgcataacaccttgcccagacagattttgaacattctgggt
tttcttagtgaaccacagcaggcaccaatgacgtttgtgcctgctacattacaaacagcg
gatgcaaccacctctcttcctggtgcaaccctgatgtga
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