Miscanthus floridulus: 136450490
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Entry
136450490 CDS
T10264
Name
(RefSeq) LOW QUALITY PROTEIN: DExH-box ATP-dependent RNA helicase DExH6-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
mflo Miscanthus floridulus
Pathway
mflo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
136450490
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mflo03019
]
136450490
03012 Translation factors [BR:
mflo03012
]
136450490
Enzymes [BR:
mflo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
136450490
Messenger RNA biogenesis [BR:
mflo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
136450490
Translation factors [BR:
mflo03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
136450490
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
HA2_C
OB_NTP_bind
Ank_2
nSTAND3
ATPase
Ank_5
HA2_N
AAA_22
R3H
AAA_19
Rad17
ResIII
AAA_23
PhoH
AAA_7
DDE_Tnp_1_4
NPHP3_N
Motif
Other DBs
NCBI-GeneID:
136450490
NCBI-ProteinID:
XP_066307039
LinkDB
All DBs
Position
5:112080398..112093207
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AA seq
1169 aa
AA seq
DB search
MGRKGRKGKGAAAGGAAGGSGGMRETTLVRVSKALEDFRASNAEVYTFEXMIHVMCRKMG
MLSKSSGNGAKRRLSVYKRKQKRGPEMEEGPSYLGFSEEARHVLQDLFMHYPPGDADLNG
DFDRNSSXKAANIKWKTDSAFCRPEMSKLDITKKVEMLASKVNGSDQLRKIMEDITKLPI
SSFKDVITSNLENHQVVLISGQTGCGKTTQVPQYILDHMWGKGESCKIICTQPRRISAIS
VAERISAERGEAVGDTVGYKIRLESKGGKNSSVLFCTNGVLLRLLIGRGTNTSKARNRKR
SLDDAILGITHIIVDEIHERDRFSDFMLTILRDLLPVYPHLRLVLMSATIDAERFSQYFN
GCSVIQVPGFTYPVKTFYLEDVLSILQSAGGNHLNTTSDKKESNVLTDDFKSSMNDSINL
ALVNDEFDPLLELISAEQNTEVYNYHHSETGVTPLIVFAAKGQLGDVCMLLSFGVDCSAQ
DHDGKSALDWAQQENQQEVCEVIKKRMECSSEKSTEDNGLLSKYLATINPEHIDTLLIER
LLGKICVDSNEGAILVFLPGWEDINQTRERLFASPFFRDSSRFLVLSLHSMIPSSEQKKV
FKRPPAGVRKIILSTNIAETAVTIDDVVFVIDSGRMKEKSYDPYNNVSTLHASWVSKASA
RQREGRAGRCQPGTCYHLYSRFRASFLPDYQXPEIKRMPLEELCLQVKLLDSNCRIADFL
KKTLDPPIPETVRNAIAVLQDLGALTQDELLTELGEKLGSLPVHPSTTKMLLFAILMNCL
DPALTLACAADYRDPFVLPIAPDERKRAAAARVELASLYGGFSDQLAVVAAFDCWRRAKD
RGQESQFCAKYFVSSNIMYVLSNMRKQLQNELSQRGFVPADASACSLNSKDPGIMRAVLM
AGAYPMVGKLLPPRKNARKAVVETASGAKVRLHPHSCNFNLSFNKSSGKPLLIYDEITRG
DGGMYIKNSSVVGSYPLLLIATEMVVAPPDDDSDEEEEDSSEDEAEESTLVQHKEEIMSS
PDSTVSVVVDRWLRFDATALDVAQIYCLREHLASAILFKVKHPQDVLPPAFGASMYAIAC
ILSYDGLPAMVPPNDLSANGGSGQNLAEASRFSQGRRADYIPPSGFLMSLLADKTHPGGS
SAHSRPSWAPVGRFDRSQRPFKRQRDAAR
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
atggggaggaaggggcggaaggggaagggcgcggcggccgggggagccgccggggggagc
ggcggcatgagggagacgacgttggtgcgcgtctcaaaggcgctcgaggacttccgcgcc
tccaacgccgaggtgtacacatttgaanncatgatacatgtgatgtgtaggaaaatgggc
atgctatccaaaagttctgggaatggggcaaagcgacgcctttctgtttataaaagaaaa
cagaagcgggggcctgaaatggaagaaggccctagctaccttgggttttctgaagaggca
aggcatgttttgcaggatttatttatgcattaccctcctggtgatgctgatttaaatggg
gattttgaccggaattctagtnataaggctgcaaacatcaaatggaaaacagatagtgcg
ttttgcaggccagaaatgagtaaacttgatataacgaagaaagtcgagatgcttgcctct
aaagtaaatggatccgaccagttgagaaagatcatggaagacataacaaaacttcctatt
tcatccttcaaggacgtcatcacttcaaatttggaaaatcaccaggtggttcttatttct
ggacaaacaggctgcggtaaaaccacccaggtgcctcaatacatcttggatcatatgtgg
ggcaagggtgaatcatgtaagatcatatgcactcaaccacgtcggatatcagctatttca
gttgccgagcgaatttctgctgaaagaggagaggctgttggtgacaccgttggatataag
atacgtttggagtcaaaaggagggaagaattcatcagtcttgttctgcacaaatggcgtt
cttttgagattactgataggaagaggaactaacacttcgaaagcacgaaatcggaaacgc
tcattagatgatgcaattttgggaataacacacatcattgtggatgaaatccatgaaagg
gataggttttctgatttcatgctgactattctaagagacttgttgccggtgtatcctcat
cttcgtttggtactcatgagtgcaacaattgatgctgagcgtttttcgcaatatttcaat
ggatgttcggtcattcaagtccctggttttacctatcctgtcaaaactttctatttggag
gatgtgctttctattctacagtctgcgggtggtaatcatcttaatactaccagtgataaa
aaagagagcaatgttttaactgatgatttcaaaagctcaatgaatgattcaattaacctg
gctttggtcaatgatgaatttgatcctctccttgagcttatttctgcagagcagaacaca
gaagtctacaattaccatcattcagagactggtgtaacacctttaattgtttttgctgcg
aagggtcagcttggggatgtctgtatgcttttatcttttggtgtggattgttcagcacag
gatcatgatggaaaatccgcattagattgggcacaacaagagaatcaacaagaggtctgt
gaagtaatcaagaaacgtatggagtgtagttcagaaaaatcaactgaagataatgggctg
cttagtaagtacttggcaactattaacccagagcacattgatactctgctaattgaacgg
ttgcttggaaaaatttgcgtggattccaatgaaggagccatcttggtatttcttcctggc
tgggaggatatcaatcaaacacgtgaaaggttatttgcttctccattctttcgggattca
tcaagatttcttgtgttgtctcttcattctatgatcccgtcttcggagcagaaaaaggtt
ttcaaacgtccaccagcaggtgttcgtaaaattattctctcaaccaatattgcagagact
gctgtgacaattgatgatgttgtgtttgtcatagatagtgggagaatgaaagagaaaagt
tatgatccatacaataatgtgtccacacttcatgcttcttgggtttcaaaagccagtgca
agacaacgcgaagggcgtgctggccgatgtcagccaggaacttgctatcatctttactca
aggtttagagcatcattcttgccagactaccaanttcctgaaataaaaagaatgcccctt
gaggaactttgtttgcaggtcaaactgcttgattcaaactgcagaatagcagactttctg
aagaaaaccttggaccctccaattccagaaactgtaagaaatgctattgctgtgcttcag
gatcttggtgctttaacacaagacgaactactaacagaattaggagaaaagctgggttcc
ctgccagtccatccatccaccaccaagatgctcctgtttgctatattaatgaactgcctg
gatccagcattgacactggcatgtgcagctgattatagagatccatttgtccttccaata
gcgccagatgagaggaaaagggcagctgcagcgagagttgagcttgcttcattgtatggt
gggttcagcgaccaacttgctgttgtggcagcatttgactgctggaggcgtgccaaagat
agaggccaagaatctcaattttgtgcaaagtactttgtctcttcaaacatcatgtatgtg
ctatcaaacatgaggaaacaacttcagaatgaactgtctcaaagagggtttgtccctgca
gatgcatctgcctgcagcttaaattctaaagatccaggtatcatgcgtgctgttcttatg
gctggtgcttacccaatggtagggaaattgctccctcctcgcaaaaatgctagaaaagca
gttgtggaaacagcaagtggtgccaaggttcgtctgcacccacactcctgcaactttaac
ctatctttcaataaatcttctgggaagccactgctgatatacgatgagatcactcgaggt
gatggtggaatgtatataaaaaattcttcagttgttgggtcatatcctttgcttctaata
gctacagaaatggttgttgctccacctgatgatgatagtgatgaagaggaggaagattcc
agtgaggatgaagctgaggaaagcactttggtacagcacaaagaagagatcatgtcttca
cctgatagcactgtttcagttgttgttgatcggtggctccggtttgacgctacggctctg
gatgttgctcaaatatactgcttaagagaacatctagcatctgctattcttttcaaagtg
aaacatccgcaagatgttctaccgcctgcgtttggagcgtcaatgtatgccattgcatgc
atcctttcatatgatggcttgcctgctatggttccaccgaatgatctttcagcaaatgga
ggttcaggccagaatttagcagaagctagcagattctctcagggaagaagagcggattat
attccacctagtgggtttctgatgtccttattagctgataagacccatccaggaggttct
tcagcgcattctcggccatcctgggctcctgttggcaggtttgatcgatctcagcgtcct
ttcaaaaggcagcgcgacgctgcacggtga
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