Miscanthus floridulus: 136450494
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Entry
136450494 CDS
T10264
Name
(RefSeq) protein PAT1 homolog 1-like
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
mflo Miscanthus floridulus
Pathway
mflo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
136450494
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mflo03019
]
136450494
Messenger RNA biogenesis [BR:
mflo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
136450494
mRNA degradation factors
5'-3' decay
Decapping complex
136450494
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
136450494
NCBI-ProteinID:
XP_066307045
LinkDB
All DBs
Position
5:112323905..112329914
Genome browser
AA seq
808 aa
AA seq
DB search
MLGVEPEGRGGASSSAAADNFDAGQYAFFGKEPLDGFELGGLEEAGSDGNGGGFGGPDEG
LYRLNSVGDEIDDLSNLSDIDDLASTFAKLNRSISGIRNPGVIGDRRSISRGSSLTVDWA
EDVEFSNWGDQDTFENEEFHESKRWWSSNSSVQQGDSNSRPLSRTSSYPQQPLQHRSSEP
FVLPKTSSFTSFPPPVAGGGRSPYPAQGLTRHGSIPSIGAGLQMGSPSMSLSASPYHMVG
PSHGLPYTGGMPYGALNLPVNNPVQNDWSNHGNPFTGEHLNLLPNLLHKQLSLPNSPMPS
LLFSQHQQRLAQVQSPHQNYLNITPHLLYPHHSAEITGRFDSVGSSHSSRDKRSRSGRGK
HSIRFSQPPSDTGSQNGDSGGIKFRSKYMSSEEIESILRMQHSASHSSDPYVVDYYHQAC
MAKRGATSKQKTNFSPTSMKDIPSKSRSSSDQHTYLQVDALGRVSFSSIRRPRSLLEVDH
PSSADGSHDQKSTVRPLEKEPMLAARVTVEDALCLLLEVDDTDRLLQSSQSQDNIFQLKR
RRQVLLEGLAASLQFVDPLGPSKSGHSSGLALKDDVVFLRIVSLPKGRKFLARYLRLLVP
GSELTRIVCMAIFRHLRFLFGGLPSDSSAAEITVALAKTVSSCVHHMELGALSACLAAVV
CSSEQPPLRPLGSSAGDGASLVIKSVLDRATELLTDRHAAASYTVPNRALWQASFDAFFG
LLTKYCVSKFESIQQMFVMQAPSSGIGPEASKATSKEMPVELLRASLPHTNEQQRQRLLD
FAQRSMPVTGFNPSGARGGHITSESVPG
NT seq
2427 nt
NT seq
+upstream
nt +downstream
nt
atgctgggcgtcgagcccgagggcagaggcggtgcgtcctcctccgccgccgcagataat
tttgacgctgggcagtacgccttcttcgggaaggagccactggacgggttcgagctcggg
ggcttggaggaagccggcagtgatggcaatggtggtggattcggtgggccagacgagggg
ctgtaccggctgaactctgttggagatgagattgacgatctgagtaacctgtctgacatt
gatgatcttgcaagcacctttgctaagttgaaccgaagcattagtggaatccggaatcct
ggtgttattggggacaggagatccatttcaagaggaagttctttaactgttgactgggct
gaggatgtggagttttcaaactggggagatcaagacacatttgaaaatgaggaattccac
gaaagtaaaagatggtggtcatccaattcttcagttcagcaaggggattccaactccaga
ccactaagtcgaacatcttcctaccctcagcagccactgcagcaccggtcaagtgaacct
ttcgttttaccaaagacatcttcatttacctcattcccaccacctgttgctggtggtggt
agatccccttaccctgctcaaggccttacacgtcatgggagcattccatcaattggtgct
ggtctccaaatgggttctccgagcatgtcactttctgcttctccataccatatggtcgga
ccatctcatggtctgccatacacgggaggaatgccttatggtgctcttaacctgcctgta
aacaatccagtgcaaaatgattggtcgaaccatggtaaccctttcactggggaacatctt
aatctactgcccaacctattgcacaaacaattgtcacttcctaatagcccaatgccgtca
ctcctattttctcagcatcagcagagattggcacaggtccaatcaccccatcagaattac
ctcaatataactccacacctgctatatccccatcactctgcagagattacaggcaggttt
gattctgttggcagttctcattcatcaagagacaagagatcaaggtcggggaggggaaag
catagcattcgcttctctcaaccaccatctgatactggtagccagaatggtgacagtgga
ggtataaagtttagatccaagtacatgtcatctgaagagattgaatcaatcttaaggatg
cagcattccgcaagtcacagcagtgatccttatgttgttgattactaccatcaagcttgt
atggcaaaaaggggcgccacttctaagcaaaagaccaatttctccccaacatcaatgaaa
gatataccatccaagtctcgatccagcagtgatcagcacacatatcttcaggttgatgct
cttggaagagtatctttctcttccatacgtaggcctcggtctcttcttgaagttgaccat
ccttcatctgctgatggctctcatgatcagaagtctactgtgaggcccctggagaaagaa
ccaatgcttgcagcaagagtcactgttgaagacgccctttgccttcttcttgaggttgat
gacactgaccgtctgttgcagtctagccagtcacaggacaacattttccaactgaagcga
agacggcaagtcctcctggaaggtctagcagcatcactgcagtttgttgatcctctcgga
cccagcaaatctggtcattcatctgggttagccctgaaggacgatgttgtttttcttcgc
attgtttctctgcccaaaggacgtaagtttttagcacgttaccttcggcttcttgtccct
ggcagcgaattgacccggatagtatgcatggctatttttcgccatttgaggttcttgttt
gggggtttgccatcagactctagtgcagcagaaattacagttgctcttgcgaagactgtt
tcgtcttgtgtgcatcacatggaacttggtgctcttagtgcctgccttgctgctgttgtc
tgttcatctgaacagccacccctgcgccctcttggtagctctgctggtgatggggcttct
ctagttattaaatcagtactggatcgagcaactgagttactgactgatcgccatgctgca
gccagctacactgtgccaaaccgtgctctctggcaggcatcgtttgatgctttctttggg
cttctaacaaaatactgtgtcagtaagtttgaaagtattcagcagatgtttgtcatgcag
gcaccaagctcaggaattggacctgaggcttccaaagctactagcaaggagatgcctgtt
gagctacttcgtgcaagccttcctcatacaaacgagcagcaacgccagcggcttcttgat
tttgctcagagatccatgccagtaacaggtttcaatccctcaggtgctagaggtgggcac
ataacttcagaatctgttcctggttga
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