Miscanthus floridulus: 136450962
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Entry
136450962 CDS
T10264
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 30
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
mflo Miscanthus floridulus
Pathway
mflo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
136450962
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mflo03041
]
136450962
03009 Ribosome biogenesis [BR:
mflo03009
]
136450962
Enzymes [BR:
mflo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
136450962
Spliceosome [BR:
mflo03041
]
Complex A
U1 snRNP components
U1 related factors
136450962
Complex B
136450962
Ribosome biogenesis [BR:
mflo03009
]
Eukaryotic type
Pre-60S particles
Helicases
136450962
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
136450962
NCBI-ProteinID:
XP_066307762
LinkDB
All DBs
Position
5:complement(139300266..139304666)
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AA seq
568 aa
AA seq
DB search
MNPYDLRFADPSSYHDRRSDLAVAPTFAPPAPVAAVNPNPYAAAYTPVPVPSAPAGGDYQ
RYGQGGRGRGGGGRGGGGGGYGGGGRGGGRGRDGLDSLALPKPDFRSLIPFEKNFYVECP
SVQAMSEADVAQYRRLRDITVEGRDVPKPVRYFQEANFPDYCMQAIAKSGFVEPTPIQSQ
GWPMALKGRDLIGIAQTGSGKTLSYLLPGLVHVGSQPRLEQGDGPIVLILAPTRELAVQI
QEESTKFGSYSRTRSTCVYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAGHTNLRRVT
YLVLDEADRMLDMGFEPQIRKIVAQIRPDRQTLYWSATWPREVEALARQFLQNPYKVIIG
SPELKANHSIQQIVEVISDHEKYPRLSKLLSDLMDGSRILIFFQTKKDCDKITRQLRMDG
WPALSIHGDKAQAERDYVLAEFKSGKSPIMAATDVAARGLDVKDIKCVINYDFPTTLEDY
IHRIGRTGRAGASGTAFTFFTHANAKFSRNLVKILREAGQVVNPALESMSKSSNSGGGGN
FRSRGRGGFGNRGHMSGSNTFALGGRPY
NT seq
1707 nt
NT seq
+upstream
nt +downstream
nt
atgaacccctacgacctccgcttcgccgacccctcatcctaccacgacaggcgcagcgac
ctggccgtggctcctacgttcgctccgccggctcccgtggctgcggtgaacccgaaccct
tacgccgccgcctacacgcccgtgcccgtgccctcggcccccgcgggcggcgactaccag
cgctacgggcagggcggcagaggccgtggtggaggcggcagaggaggtggcggtggtggg
tatggaggtggcggcagaggaggaggtcgcgggagggacgggcttgactcgctcgccctc
cctaagccggacttccggagcctgataccgttcgagaagaacttctacgtggagtgtccg
tccgtccaggctatgtcggaggcggatgtggcgcagtaccgccgcctccgggatatcacc
gtagagggccgggatgtgcccaagccggtccgatacttccaggaagccaacttcccagat
tactgcatgcaagcgattgccaaatctggatttgtggagccaactcctattcaatctcaa
ggttggcctatggctttgaagggtagggacctgattggtatcgctcaaacaggctcaggg
aaaacattatcttatctgctacctgggttggttcatgttggttcccagcctcgtctagaa
caaggcgatggcccaattgtattaatcctcgcccccacaagagaactggctgttcaaata
caggaagaatctacaaaatttggatcatattcaagaactagaagcacgtgtgtctatggt
ggtgcacctaagggtccacaaatacgtgaccttagaagaggagttgaaattgtcattgca
actcctggtcggctgattgatatgctggaagccggtcacacaaacctacgtagagtgaca
taccttgtgctggatgaggcagaccggatgctagatatgggttttgagccccaaattcga
aaaatagttgcacagatccgcccagacaggcaaaccttgtactggagtgccacatggcct
agagaagttgaagccttagcaagacagtttttgcaaaatccttacaaggtaatcatagga
tcacctgaacttaaagctaatcattccatacaacaaattgttgaagttatttcagatcat
gagaagtatccaagactcagtaagctcttgtctgatctaatggatgggagccgtatcttg
atattcttccaaacaaaaaaggactgcgataagatcacccggcaacttagaatggatggg
tggccagcattatctatacatggtgataaagctcaagctgaacgggactatgttcttgca
gagtttaagagcggcaagagccccataatggctgccacagatgtggcagcacgtggtctt
gatgtgaaggacataaagtgtgtgataaattatgattttccaacaactcttgaagattat
attcacaggataggtcgaactggccgtgctggtgctagcggaactgcatttacttttttc
acacatgcaaatgcaaagttctcaaggaatcttgtgaagattctgcgggaagctggccaa
gttgtgaatcctgcactagaatccatgtccaagtcttcaaactcagggggaggaggcaat
ttccggtcgagaggcagaggtgggtttggtaaccggggtcatatgtctggatcaaatacc
ttcgctttaggaggaaggccatattga
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