Miscanthus floridulus: 136451002
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Entry
136451002 CDS
T10264
Name
(RefSeq) THO complex subunit 2-like
KO
K12879
THO complex subunit 2
Organism
mflo Miscanthus floridulus
Pathway
mflo03013
Nucleocytoplasmic transport
mflo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
136451002
09122 Translation
03013 Nucleocytoplasmic transport
136451002
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mflo03019
]
136451002
03041 Spliceosome [BR:
mflo03041
]
136451002
Messenger RNA biogenesis [BR:
mflo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
136451002
Spliceosome [BR:
mflo03041
]
Complex C
Other components
EJC/TREX
136451002
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
136451002
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
Motif
Other DBs
NCBI-GeneID:
136451002
NCBI-ProteinID:
XP_066307818
LinkDB
All DBs
Position
5:complement(141721913..141744316)
Genome browser
AA seq
1771 aa
AA seq
DB search
MSPPLQAPNYKHITEECLREWKGQSAGAFRIPDPVPMARFLYELCWAIVLGDLPPQKSRV
ALESVVFVEEARREEELGSVLADIIAHLGQDITISGEYRSRLVKMTKSFLESSITAPRLL
QERCEEDFLWEVEQSKLKGQDLKSKEVRVNTRLLYQQTKFNLLREESEGYAKLVTLLCQV
GSDLACQNSSSVTISIIKSLIGHFDLDPNRVFDIVLECFELYQDSNIFHQLIPLFPKSHA
AQTLGFKFQYYQRLDVNSTVPSGLLRTAALLIKSGFIDLDNVYSHLLPNDDEAFEHFDSF
ISRRIDEANKIGKINLAATGKDLMDDEKQEITINMYTALEIENDIVGERAPEMEKNQKLG
LLLGFLSVHDWYHAQLLFERLAHLNPVEHIEICDGLFRMIEKTMSSAYYIVCHLYYYLPP
RNDADQTGTSALFLSSFDLPKEFFQMLTACGPYLHRDTQLLQKVCRVLKAYYHSSKESTR
AANVVSPESRIEEALGSCLFPSLQLIPANPAVDMEIWGVLSLLPYEARYRLYGEWEKETE
QNPIVLAARQTAKLDTRRLLKRLAKENLKPLGRMVAKLAHANPMTVLRTIVQQVEAYRDM
ITPVVDAFKYLTQLEYDILQYIVIERLAQGGRAKLKDDGLNLSDWLQCLASFWGHLCKKH
NAVELKSLLQYLVNQLKKGVGIELVVLEELIQQMANVQYTENMTEEQVDAMAGSETLRQQ
ASLFGATRNYKVLSKSTNRLRDSLLPKEEPKLAVPMLLLIAQHRSKIIINADATYIKMVS
EQFDRCHGILLQYVEFLSSAVTPTAYAQLIPPLQDLVHKYHIEPEVAFLIYRPVMRLFKS
SNGGDTCWPLDDNEEGESVSSDDLILHLDSSQEPIMWSDLLNTVQSILPAKAWNSLSPDL
YATFWGLTLYDLHFPKDRYDTEINKLHDNLKQLEDNSDNSSIAISRRKKDKERIQDLLDK
LNSESQKHQQHIASVVQRLAREKDKWLSSSPDAMKINMEFLQRCIFPRCVFSMQDAVYCA
TFVQTLHSLGTPFFNTVNHIDVLVCKTLQPMICCCTEFEAGRLGRFFHDTLKMAYYWKSD
ESVYERECANKPGFAVYFRYPNSKRVSYSQFVRVHWKWSSRITKALNQCMESKEYMEIRN
ALIVLTKISSVFPVIRKSGVNLEKRVAKLKGDEREDLKVLATGVAAALAARKSSWLSEEE
FGMGHIDLKPATARSVLGNQSADPSMAKDQNARAKSIENKHERSEGAMKPDVQQKKSSVP
ANGSDIQIPSSSVQGKSSVVVRAVDEPPKPVSDEGVKVSTKPTSESETRATQKRAHNAGK
VMKHDVAKEDAKAGKSTSWNVNQQVSTVDREAMPHQADAAQETNTTISNGNLHPVQRKVS
SSSQRNAVLVTQNGAANPSGESTDLIDSTVRQQKRPALIEEQDRSGKRRKGENEADLSEH
HADKEKSLDSRGGDKFRSVDHEKSANEEQNLSRADRMKEKSDDKYDRDPREKIDRAERRR
GEDAIERSTDRLSERRERSIERMQERVTDKAPEKGREDRNKDERNKVKYAEPSVDRTHSS
DERFRGQSLPPPPPLPASFVPQSVGANRREEDADRRGGSSRHVQRSSPRRDEKERKQSEE
NTSSFQDDGKHRREEDIRDRKREDRDILSNKVDDRDREKGTSLKEDSDPTSASKRRKIKR
DQTSLEAGEYAPSAPQPPSHGSGSSQLSDVRERERKGLISQHRTSHADDLPRTHGKDTAS
KSSRRESDQMHEREWEEEKRQRTETKRKHRK
NT seq
5316 nt
NT seq
+upstream
nt +downstream
nt
atgtcgccccctctgcaggcgcccaactacaagcacatcacggaggagtgccttcgcgaa
tggaagggccagtccgccggcgccttccgcatccctgatccggtgcccatggcgcgcttc
ctctacgagctctgctgggcgatcgtgctgggggacttgccgccgcagaagagccgggtg
gcgctggagtcggtggtgttcgtggaggaggcacggcgggaggaggagctcggctccgtg
ctcgctgatatcattgctcacctaggacaggatattacaatctctggtgaatatcgcagc
cgtcttgttaaaatgactaagtcatttctggagtcctcgattactgcgcctaggcttctg
caagagcgatgtgaagaagatttcctttgggaggttgaacagagtaagctgaaaggccag
gatttaaaatccaaggaggttagggtcaacacacggctcctttaccagcaaactaaattc
aacctcttaagggaggaaagtgagggctatgccaagttggtgacactcctttgtcaagtt
ggttcagatctggcttgccagaattcttcttcggttacgatcagcattataaagtcattg
attggccattttgatctggacccaaatcgtgtatttgatattgtgttggaatgctttgaa
ctttatcaagatagtaacatctttcatcagctcatacctcttttcccaaagtcccatgct
gctcaaactttggggttcaaattccagtactatcaacgattggatgtcaacagcactgtt
ccatctggccttttaagaacagcagctttattgatcaaatctggattcattgaccttgat
aatgtctattctcacttgcttccaaatgacgacgaggcgtttgagcattttgattctttc
atttcaagaagaattgatgaggctaataaaattggcaaaatcaaccttgctgctactgga
aaggaccttatggatgacgagaaacaagaaatcactatcaatatgtatacagcattggag
attgaaaatgatatagttggggagcgagcccctgagatggagaagaaccagaaacttggg
cttcttcttggttttctctctgtgcatgactggtatcatgcacaactactctttgagcgt
cttgcacacctaaatcctgttgagcacattgaaatctgtgatggattatttagaatgatt
gaaaagacaatgtcttcagcctattatatagtttgtcacctgtattattacttgcctcct
agaaatgatgctgaccagacaggcacatctgctctgtttttaagttcatttgatctgcca
aaggagtttttccaaatgctcaccgcttgtggaccatatcttcatcgtgatactcaatta
cttcaaaaggtttgcagagtattaaaagcgtactaccactcatcaaaagagtcaacccgt
gcggcaaatgtagtttcaccagaatctcgaattgaggaagcacttggctcgtgcttgttt
ccttcgttgcagcttatccctgctaatcctgctgttgatatggagatatggggggttctt
tcccttcttccatatgaggcccgctatcgtctgtatggtgaatgggagaaggagaccgaa
caaaacccaattgtccttgctgcaaggcaaactgcaaagctggacaccagaaggctccta
aaacggttggctaaggaaaacctgaagccacttggccgcatggtggctaaacttgcccat
gcgaatcccatgactgtgcttaggacaattgtccaacaggttgaagcatacagggatatg
attacaccagttgtggatgcattcaagtacttgactcagctggagtacgacatcttgcaa
tatattgtcattgaacgcttggcacaaggtggtcgtgcgaaacttaaagatgatggactt
aatctctcagattggcttcaatgtcttgcatccttttgggggcacctgtgcaagaagcat
aatgctgtggaactgaaaagccttttgcagtatcttgttaatcaactgaagaagggtgtg
ggcattgaacttgttgtcctggaggagctcattcagcaaatggcgaatgtgcagtacacc
gagaacatgacagaggaacaggtcgatgctatggcaggaagtgagactttgcggcagcaa
gcttcactgttcggagcaacaagaaactataaggtgttgagtaagtccacaaataggcta
agggattcgttgcttccaaaagaagagcccaaacttgcagttcctatgttactgcttatt
gctcagcatcggtccaagatcataataaacgcagatgccacatatatcaaaatggtcagt
gagcagtttgatagatgccatggaatacttcttcagtatgttgagtttctttcaagcgcc
gtaactccaaccgcctatgctcaactaatacctcctttgcaagatctggtccataaatac
cacattgagccagaggttgctttccttatataccgcccagtgatgcggctttttaagagc
agtaatggaggtgacacttgttggcctcttgatgacaacgaggaaggagaatctgtatca
tctgatgatcttatcttacatcttgactcgtctcaggaaccaatcatgtggtcagatctt
cttaacacagtccagtcaattttgccagcaaaagcttggaacagtctttcaccagattta
tatgctactttctggggcttaacactctatgatcttcacttcccaaaagaccgttatgat
acagaaatcaataagctgcatgataatctcaaacaattggaggacaactcagataactct
agcattgcaatttcaagacgtaagaaggacaaggagagaatccaagatttactcgacaaa
ctgaacagtgaatctcagaagcaccagcagcacattgcatctgtggtccaaaggttagcc
cgtgaaaaggataagtggttgagctccagtccggatgcaatgaaaatcaacatggagttc
ctacagcgctgcatattcccacgatgtgtttttagtatgcaagatgcagtatattgtgct
acatttgtccaaacactacactcccttgggactcctttctttaacacagtcaatcatatc
gatgttctcgtctgtaaaaccctacagccaatgatatgctgttgcacggaatttgaagct
ggcaggcttggaaggttttttcatgatacattgaagatggcctactattggaagagtgat
gaatctgtttatgagcgtgaatgtgcaaacaaaccaggttttgcagtgtacttcagatac
ccaaacagcaagcgtgtatcctatagtcagtttgttcgggttcattggaagtggagttca
agaatcaccaaagcgcttaaccaatgcatggaatcaaaagaatacatggaaatccgaaat
gcccttattgtgctcacaaagatttctagtgtctttccggtgattcgtaaaagtggtgtg
aatcttgagaaacgggtggctaaactaaaaggggatgagagagaagatcttaaagttcta
gccactggtgtagctgctgctttagctgctcgcaagagttcttggctatctgaagaagag
ttcggcatgggacacattgatctgaagccagcaacagcaagatctgtgcttggaaaccag
tcagcagatccctcgatggcaaaagatcaaaatgcccgtgcaaagtctatagagaataag
catgaaaggtcagagggtgctatgaagcctgacgttcagcaaaagaagagctctgtgcct
gcaaatggatctgatattcaaataccatcttcctccgtacaagggaaatcttcagtggtt
gtacgtgcagtggatgaacctccaaaacctgtgtctgatgagggggttaaagtttctaca
aaacctacttcggaatctgagacaagagcaacacaaaagcgtgcacacaatgctgggaag
gtaatgaagcatgatgttgcaaaggaagatgcaaaagctgggaaatctactagctggaat
gtaaatcaacaagtctcaactgttgatagagaagcaatgcctcatcaagctgatgctgcc
caagaaaccaataccactattagcaatggtaacttgcatccagtgcagcggaaggtttcg
tcatcttctcaaagaaatgcagtgttggttacacaaaatggagcagctaatccctctggt
gagtctactgatctgattgactctaccgtgagacagcaaaaaagacctgctctgattgag
gagcaagatagatcaggtaaacggaggaaaggagaaaatgaagccgatttgagtgaacac
catgcagacaaggaaaagagtttggactcacgtggcggagataagtttcgttcagtggat
catgagaagagtgctaatgaggaacaaaacttaagtagggcagacagaatgaaagagaaa
tctgatgataaatatgacagagatcctagggaaaaaatagatcgagctgaaaggcgtcgt
ggggaagatgccattgaaagatcaacagatagattatcggagaggagagaacgttctatt
gaaaggatgcaagagagagttacagataaagcccctgaaaaaggtagagaggatagaaat
aaggatgagaggaataaagttaaatatgctgaaccttcagtggaccggacacattcttct
gatgaacgattccgagggcaaagtttgccaccacccccacctcttcccgcaagttttgta
ccccaatcagttggtgccaaccgacgtgaagaagatgctgaccgaaggggtggaagctcc
aggcatgttcaaaggtcatctcccaggcgcgacgagaaagaaaggaagcagtcagaggag
aatacttcgtcatttcaggatgatgggaagcacagaagagaggaagatattcgtgataga
aagcgtgaggatagggatatattatcaaacaaggtagatgacagggatagggaaaagggg
acttctttgaaagaagacagtgaccctactagtgcttctaaacggagaaagatcaagcga
gaccagacttctttagaagccggggaatatgcaccttctgctccacagcctccctcccat
ggatccggcagctcacaattgtctgacgtgcgagaaagagaaaggaaagggttaatttca
caacatcgtacctcgcacgctgatgaccttcctaggacgcatggcaaggacacggcaagc
aaatcaagtcgtcgagagtctgatcaaatgcacgagagggaatgggaagaggaaaagcga
caaagaactgaaacaaaaaggaagcatcggaaatag
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integrated database retrieval system
