Miscanthus floridulus: 136451505
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Entry
136451505 CDS
T10264
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10-like isoform X1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
mflo Miscanthus floridulus
Pathway
mflo03018
RNA degradation
Brite
Enzymes [BR:
mflo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
136451505
Messenger RNA biogenesis [BR:
mflo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
136451505
Spliceosome [BR:
mflo03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
136451505
Complex C
U4/U6.U5 tri-SnRNP related factors
136451505
Ribosome biogenesis [BR:
mflo03009
]
Eukaryotic type
Pre-60S particles
Helicases
136451505
Transfer RNA biogenesis [BR:
mflo03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
136451505
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
nSTAND3
Motif
Other DBs
NCBI-GeneID:
136451505
NCBI-ProteinID:
XP_066308301
LinkDB
All DBs
Position
5:complement(10676511..10684046)
Genome browser
AA seq
1004 aa
AA seq
DB search
MGEEADSTCKRKAPDSSAEEQPSPAPAQSQAEADPAAKRRNLSRSCVHEVAIPKGYESAK
DEAVHGTLANPDFNGEMAKQYPFKLDPFQSTSIACLERNESVLVSAHTSAGKTVVAEYAI
AMAFRDKQRVIYTSPLKALSNQKYRELSQEFTDVGLMTGDVTLHPNATCLVMTTEILRAM
LYRGSEVIKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATEFAEW
ICSLHKQPCHVVYTDFRPTPLQHYVFPIGGSGLYLVVDENGQFREDNFAKLQDSFAKQNN
QLDGRKGGGPKASGRIAKGGSASGNSDIYRIVKMIMERKFQPVIIFSFSRRECEHHAMSM
SKLDFNTEDEKECIEQVFRNAIGCLVEEDRSLPAIELMLPLLKRGIAVHHSGLLPIIKEL
VELLFQEGLVKALFATETFAMGLNMPAKTVVFTSVKKWDGDTNRYIGSGEYIQMSGRAGR
RGKDERGICVIMIDEKMEMSVIKDMVLGKPAPLVSTFRLSYYTILNLMSRVEGQFTAEHV
IRHSFHKFQYEKALPEIVQKIKRLEDEATLLDSSGETDLAEYHKLGLDISELEKKIMSEM
IRPERALLYLVPGRLVRVRDGSTDWGWGVVVNVVKKPPVSGTLPPALSASRSNNYIVDTL
LHCSSNSSENGSRSKPCPPRPGEKGEMHVVPVPLPLVSGLSSVRINIPPDLRPPEARQNI
LFAVHELGKRYPQGLPKLHPINDMGIQVPELVDLVHKLEDLEQKQCSHRLHKSGQSDQEL
SWYQRKADLNSEIQQLKSKMRDSQLQKFRDELKNRSRVLKMLGHIDADGVLQLKGRAACL
IDTGDELLITELMFNGTFNDLDHHQVASLASCFVPCDKSSEQIRLRNELSRPMMQLQEAA
RKIAEVQKECKLEVNVEEYVESTCRPYLMDVIYCWSRGSTFAEVMEMTDIFEGSVIRLAR
RLDEFLNQLRAAAEAVGEVTLEKKFEKASESLRRGIMFSNSLYL
NT seq
3015 nt
NT seq
+upstream
nt +downstream
nt
atgggggaagaggcggatagcacctgcaagcgcaaggcgccggactcgagcgcggaggag
cagccgagccccgcgccggcgcagtcgcaggcggaggcggacccggccgccaagcgccgg
aacctctcccgctcgtgcgtccacgaggtcgccatcccgaaagggtatgagtcggccaag
gacgaggcggtgcacgggacgctcgccaacccggacttcaacggggagatggccaagcag
tatccgttcaaactcgaccccttccagagcacctccatcgcgtgcctggagcggaacgag
tccgtgctcgtctccgcgcacacttccgcagggaagaccgtcgttgccgagtatgccatc
gccatggcgttcagggacaagcagagggtcatctacacctccccgctcaaggccctgagc
aaccagaagtacagggagctcagccaggagttcacagatgttggactgatgactggcgat
gtcacactccatcccaatgccacgtgcctggtcatgacgacagagatcctcagggcgatg
ctctacaggggctctgaggtgattaaggaggttgcctgggttatattcgatgagatacat
tacatgaaggatcgtgagagaggagttgtgtgggaggagagcatcattttcttgccccct
gccatcaagatggtcttcctttccgctaccatgtcgaatgcgactgagtttgctgagtgg
atatgcagcctgcacaagcagccctgtcatgttgtgtatacggacttcaggccgacacca
ttgcagcactatgtgtttccaataggcggttctggtctgtaccttgtagtagatgaaaat
ggccagtttagagaagataactttgcaaagctacaagactcgtttgctaagcaaaataat
caactggatggaaggaaaggtggtggacctaaagcgagtggccgaattgcgaaaggtgga
agcgcctctgggaattctgacatatacagaattgtcaagatgattatggagcgcaagttt
caaccagtcataattttcagctttagtagaagagaatgtgagcaccatgccatgtctatg
tcaaaacttgatttcaacactgaggacgaaaaggaatgcattgagcaggttttccgtaat
gctattggttgtttagtcgaggaagatagaagtttacctgctatagagttgatgttgccg
cttcttaaacgaggtattgcagtacatcattctggacttcttccaataattaaggagctg
gttgagttgctctttcaagaaggtcttgtcaaagctctctttgctactgagacatttgcc
atgggtcttaatatgcctgcaaaaaccgttgttttcacctctgtcaaaaaatgggatggt
gatactaaccgctatattggatctggagaatacatacagatgagtggaagagctggccgg
cgtgggaaggatgaacgtggtatttgtgttataatgatagatgagaagatggaaatgagt
gttatcaaggacatggtgttaggcaaaccagcacctcttgtcagtactttccggctgagc
tattacactattctgaacttaatgagccgtgtagagggtcaatttactgctgagcatgtg
attaggcattcattccataagtttcagtatgagaaggcattgccagaaatagttcaaaag
attaaacggttggaggatgaagctaccttgctcgattcttctggagagactgatcttgct
gaatatcacaaattggggcttgatatatctgaactagagaagaaaatcatgtctgagatg
attagaccagagagggctttgttgtatttggttcctggaaggctggttagagtgagggat
ggttcaacagactggggatggggtgtggttgtaaatgtagtgaagaaacctccagtatct
gggactctcccccctgcattaagtgcatcgcgcagcaataactatatagttgacaccttg
cttcactgctcctctaattccagcgagaatggatcacgttcaaagccatgcccgcctcgc
ccaggggagaagggtgaaatgcatgtggtgcctgtaccattgcctttagtatctggtcta
agcagtgttagaatcaacattcctcctgatctacgaccacctgaagcaagacagaatata
ctttttgcagtgcacgaactaggaaagcgctacccccaaggccttccgaagctacatcca
atcaacgatatgggtattcaagtacctgaactagttgacttggtacataaacttgaggac
cttgagcagaaacaatgctctcacagacttcataagtctggtcaaagtgatcaggaacta
tcttggtaccaaagaaaagcagacttgaatagtgaaattcagcaactcaagtcaaagatg
cgggattcacagctacaaaaatttagggacgaacttaagaaccggtcccgcgttctgaag
atgcttggtcatattgatgctgatggtgttctccagttaaagggacgtgctgcctgttta
atagacacaggggatgaactgcttatcactgaacttatgttcaatggtacatttaatgat
cttgaccatcatcaagttgcttcccttgctagctgctttgtaccttgtgataaatcaagt
gagcagatacgcctaagaaatgaactttctaggccgatgatgcaacttcaggaggctgca
agaaaaatagctgaggtacaaaaagaatgcaaactggaagtaaatgtggaggaatacgtt
gaatcaacctgcagaccctaccttatggatgtcatatactgctggtcaaggggatccacc
tttgcagaggtgatggaaatgaccgacatttttgaaggaagtgtcataaggcttgctcga
aggctggatgaatttctgaatcagttgagagctgctgctgaagccgtaggggaggttacc
cttgagaagaagttcgagaaggcaagtgagagtttgcgtcgggggatcatgttttccaac
tcattgtatctgtaa
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