Miscanthus floridulus: 136452280
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Entry
136452280 CDS
T10264
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
mflo Miscanthus floridulus
Pathway
mflo03013
Nucleocytoplasmic transport
mflo03015
mRNA surveillance pathway
mflo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
136452280
09122 Translation
03013 Nucleocytoplasmic transport
136452280
03015 mRNA surveillance pathway
136452280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mflo03019
]
136452280
03041 Spliceosome [BR:
mflo03041
]
136452280
Enzymes [BR:
mflo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
136452280
Messenger RNA biogenesis [BR:
mflo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
136452280
Spliceosome [BR:
mflo03041
]
Complex C
Other components
EJC/TREX
136452280
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
136452280
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
DNA_repr_REX1B
Motif
Other DBs
NCBI-GeneID:
136452280
NCBI-ProteinID:
XP_066308999
LinkDB
All DBs
Position
5:complement(67492154..67501574)
Genome browser
AA seq
428 aa
AA seq
DB search
MGEAKDNEVYEEDLVDYEEEVENVVDGAATNGSADVVKKGYVGIHSSGFRDFLLKPELLR
AIQDCGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVAALV
LCHTRELAYQICHEFERFSKYLLELRVAVFYGGVHIKNHKDLLKNECPHIVVGTPGRILA
LARDKDLPLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPV
CKRFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEAEKNRKLNDLLDALDFNQVVIFVKSVS
RAAELNKLLCECNFPSICIHSGMTQEERLTRYKNFKEGHKRILVATDLVGRGIDIERVNI
VVNYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQI
DTSTYMPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgggagaggcgaaggacaacgaagtgtacgaggaggacctcgtcgactatgaggaggag
gtggagaatgtcgtcgacggcgccgccaccaacggctccgcagatgtcgtcaagaagggg
tacgtggggatccacagctcggggttcagagacttcctgctcaagccggagcttctccgc
gccattcaggactgcgggtttgagcatccttccgaagtgcaacatgagtgcatccctcaa
gctattcttggaatggatgtcatctgtcaagcaaaatctggaatgggtaagactgcggtt
ttcgtcctctcaactcttcagcagattgatcctgttgctggccaagtagctgcacttgtg
ttgtgccacacaagagagttagcttaccagatttgccatgaatttgagaggtttagcaaa
tacctgcttgaattaagagtagctgttttctatggtggtgttcacataaaaaaccacaag
gatctgttgaagaatgaatgcccccatattgtggttggcacgcctggaaggatactggct
ctagctagagataaggaccttcccttgaagaatgtgcggcatttcattcttgatgaatgt
gacaagatgcttgaatcacttgacatgcgcagagatgtccaggagatcttcaaaatgact
ccccatgataagcaagtgatgatgttttcagcaacactcagcaaggagattcgacctgtt
tgcaagagattcatgcaagacccaatggaaatttatgttgatgatgaggctaaactgacc
cttcatggtctagttcagcactatatcaaattgagtgaggcagagaagaaccgaaagttg
aacgaccttttagatgcgctcgacttcaaccaagttgtgatatttgttaaaagtgttagt
agagctgcagaactcaacaaattgctctgcgagtgcaatttcccctcaatctgcatacat
tctggaatgacacaggaagagaggttgacccggtacaagaacttcaaggaaggacacaag
aggattcttgtggctactgatttggttggtaggggaattgatattgagcgtgtcaacatt
gtcgtgaactatgacatgcccgattctgctgatacatacttgcatagggttggtcgggct
ggacgttttggcaccaagggacttgcaataacatttgtttcttctgcatctgattctgat
gttctcaatcaagtgcaggagaggtttgaggttgacataaaggagctgcctgagcagatt
gacacttcgacatacatgccatcttga
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