Miscanthus floridulus: 136456114
Help
Entry
136456114 CDS
T10264
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 40-like isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
mflo Miscanthus floridulus
Pathway
mflo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
136456114
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mflo03041
]
136456114
03009 Ribosome biogenesis [BR:
mflo03009
]
136456114
Enzymes [BR:
mflo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
136456114
Spliceosome [BR:
mflo03041
]
Complex A
U1 snRNP components
U1 related factors
136456114
Complex B
136456114
Ribosome biogenesis [BR:
mflo03009
]
Eukaryotic type
Pre-60S particles
Helicases
136456114
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Cas3-like_C_2
Transformer
THRAP3_BCLAF1
Motif
Other DBs
NCBI-GeneID:
136456114
NCBI-ProteinID:
XP_066311994
LinkDB
All DBs
Position
6:complement(70903051..70908006)
Genome browser
AA seq
790 aa
AA seq
DB search
MSGGSASSGRAAPRYAPDDPTLPKPWRGLVDGTTGYLYYWNPETNVTQYEPPMPPDNQLL
PPPPPLPPPPPRSRDRRDRSRSRSRSRTPPRRDHRDRDRDRDRRHDEHASSKSASSHHQP
APVAVADDPSTEAYSRRHEITVTGDNVPAPITSFEAGGFPSEILKEIQRAGFASPTPIQA
QSWPIAMQSQDVIAIAKTGSGKTLGYLLPGFMHIKRLQNSTRNGPTVLVLAPTRELATQI
LDEAVKFGRSSRISCTCLYGGAPKGPQLRDLDRGVDVVVATPGRLNDILEMRRVSLKQVS
YLVLDEADRMLDMGFEPQIRKIVKEIPHRRQTLMYTATWPKEVRRIADDLLVHPVQVTIG
SVDELVANSAITQHVEVITPSEKQRRLEQILRSQDSGSKILIFCTTKRMCDQLARTLTRQ
FGASAIHGDKSQSEREKVLNHFRSGRSPILVATDVAARGLDIKDIRVVINYDFPTGVEDY
VHRIGRTGRAGATGVAYTFFCDQDSKYAADLIKILEGANQRVPCDLDDMASRGGGRGKKR
NRWASHSDRGGSRSELDSRSGRGSRGRDDYGSRGRYDSGETDGRSRRSARGRSRSRSRSH
SRSRSPSPKRSRRHEARRSRTKSRSRSRSRSYRNHRASRSKSRSPVASRRHEKTAAISGS
ARPNSGHAEHKSPPRSHSVDDHVNHSDHKDDHMEDGKMERVDLDRSPSPQDDKSAPYSPV
YNGKASGSMSPNVQPEADAKYVKPSGKPEPASPVRHSKGRDDDEEGIIDEDGEIAEDDPR
ANAAVQNGNN
NT seq
2373 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggagggagtgcttcatccgggcgcgcggccccgcggtacgccccggatgacccg
acgctgcccaagccgtggcgaggcctcgtcgacggcaccaccggctacctctactactgg
aacccggagacgaacgtgacgcagtacgagccgcctatgccccccgataaccagctacta
ccgcccccgcccccgttgcctcccccgcctccccggagccgcgaccgccgcgacaggtcc
aggtcccgatcccgatcccgcaccccgccccggcgcgaccacagggaccgcgatcgcgac
cgtgacaggcgccacgacgagcacgcgtcctcgaagtcggcgtcttcccaccatcagccg
gctccggtagccgtcgccgacgatccgtccaccgaggcttacagccgccgccatgagatc
accgtcacgggggataacgtgccagctccaataacttcatttgaggctggtggcttcccg
tcagaaattctgaaggagatacaacgtgctggatttgcaagcccaacacctatccaagcc
cagtcatggccaattgctatgcaaagtcaagatgtaatagctattgcgaagactggatca
ggcaaaactcttgggtatctacttcctggatttatgcatatcaaacgcctgcagaacagc
actaggaatggtccaacagtgctagttttggccccaacaagggaacttgcaacacagatt
ctggatgaagctgtgaaatttggaagatcttctagaatttcttgcacgtgcctatatggt
ggtgctcctaaaggtcctcagttgagagatttagatagaggggttgatgttgttgttgca
acacctggaaggttaaatgacattttggagatgcgaagggtaagtcttaagcaagtgtcg
tatcttgttcttgatgaggctgatcgcatgctggacatgggctttgagccacaaatacgg
aagatagtgaaagagatacctcaccgtcggcaaacccttatgtacactgctacttggccc
aaggaagtccgaaggattgcagatgatcttcttgttcatcctgtacaggtgacaattgga
agtgttgatgagcttgttgctaatagtgctattactcagcatgtagaggtcataacaccc
tcagaaaaacaacggcgcctggagcagatattacgatcccaggattcaggttcaaagata
ttaatattttgtaccaccaagaggatgtgtgaccagcttgcaaggacactcaccaggcag
tttggagcttcggccattcatggtgacaagtcccaaagtgaaagggagaaggttctgaat
cattttcgatctgggcggtcacctattttagtggcgactgatgttgctgcgcgaggtttg
gacatcaaagatatcagggtagtgatcaactatgacttccccactggtgttgaagactat
gttcacaggattggcaggacaggaagggctggtgccactggtgttgcatatacatttttc
tgtgatcaggattcaaaatatgctgctgacctaatcaaaattctggaaggggcaaaccaa
cgggtgccctgtgatttagatgatatggcttctcgtggtggtgggcgaggtaagaagagg
aaccgttgggcatcccactctgacaggggtggttcacgttctgaactggattcaaggagt
ggtcgtggcagtcgtggaagggatgattatggtagccgtggcaggtatgactctggtgaa
actgatgggcgatctcgtaggtctgctagaggtcgcagtagaagccgtagcagaagtcac
agtagaagccgtagcccaagtcccaagaggtcacgccgtcatgaagctagacgtagcagg
actaagagtcggagtaggagcaggagcaggagctatagaaaccatcgtgctagccgcagc
aagagtcgcagccctgttgctagccgtaggcatgaaaagactgctgctatttcaggatct
gctcggcctaactcggggcatgcagagcacaaaagccctccaagatctcactctgtggat
gaccatgtgaaccactctgaccacaaggatgaccacatggaagatgggaagatggaaagg
gttgatcttgatcgctcgcccagcccacaagatgacaagtctgctccatatagtcctgtg
tacaatggcaaagccagtggctcgatgagccccaatgttcagccagaggcagatgccaaa
tatgtcaaaccttctgggaaacctgagcctgcatctccagtgcgccacagcaaaggcaga
gatgatgacgaggaaggtatcatagacgaggatggagagattgctgaggatgatccacgt
gcaaatgcagctgtgcagaatggtaataactga
DBGET
integrated database retrieval system
