Miscanthus floridulus: 136456481
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Entry
136456481 CDS
T10264
Name
(RefSeq) protein SPA1-RELATED 4-like isoform X1
KO
K26557
protein SPA1-related 3/4
Organism
mflo Miscanthus floridulus
Pathway
mflo04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
136456481
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
mflo04121
]
136456481
Ubiquitin system [BR:
mflo04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Multi subunit type E3 associated proteins
136456481
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
Beta-prop_EML_2
WDR55
Beta-prop_TEP1_C
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_EIPR1
Beta-prop_CAF1B_HIR1
Beta-prop_RIG_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_HPS5
Pkinase
WD40_MABP1-WDR62_1st
PK_Tyr_Ser-Thr
Beta-prop_WDR35_TULP_N
Beta-prop_IFT140_1st
WD40_RFWD3
Beta-prop_WDR75_1st
WDR54
WD40_like
Beta-prop_NUP159_NUP214
Beta-prop_WDR11_2nd
Motif
Other DBs
NCBI-GeneID:
136456481
NCBI-ProteinID:
XP_066312479
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Position
6:105114493..105120888
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AA seq
783 aa
AA seq
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MEPSRGAAGGGRRWGDAEAEAEGDAAEEGRRAEDGGEVSLREWLDRLGRAVEAAECVHVF
RQVAEAVAVAHAQGVAVGSARPSCFVVSPPFARVAFIESASGSDASGSCSGSDASEDADP
DASPPRRRDGAGRGEERAGKSFPLKSVLAMELNWYTSPEEADDSAATFASDVYRLGVLLF
ELFCTFETMEDKMRAMANLRHRVLPPQLLLKWPKEASFCQLLMHPVPETRPKMSEVLQSE
FLNQSRNSLEEREAALRLREEIEEQELLLDFLQQLQKRKQDIADSLQDTVAFLSSDINEV
LHQQSALGHCVNFSYDLDKEVCSGTVEDQSDCGSRKRFRPELQGVDMEENNRSVEECSRT
VPSSELIQESVLSKSSRLMKNLKKLETAYFLTRSKLAKQVGNQISSHQVVKRATGSAIGT
EGSSIDDFSLERQYGRRQRGWVNSFLEGLCKYLSFSKLKVRAELKHCDLLNSSNLVCSVG
FDRDREFFATAGVNKKIKVFEYNMIVNEHRDIHYPVVEMSNRSKLSCICWNSYMKSHIAS
SDFEGIVQVWDVTRSQVFVEMREHERRVWSVDFSIVDPTKLVSGSDDRSVKLWDMNQAGS
IGTIRTRANVCSVQFQPDSARSIAIGSADHKIYCYDLRNIRAPYCTLVGHTKTVSYVKYL
DASTIVSASTDNSLKLWDLSMSQGRIIDSPLQTFTGHTNTKNFVGLSISDGYIATGSETN
EVFVYHKEFPMPVLAYKFSVTDPISGQEIDDQSQFISCVCWRGQSSTLLSANSSGNIKIL
EMD
NT seq
2352 nt
NT seq
+upstream
nt +downstream
nt
atggagccgtcccgtggcgctgctggcggcgggcggcggtggggggacgcggaggcggag
gcggagggcgatgcggcggaggaagggagacgagcggaggacgggggcgaggtgagcctg
cgggagtggctggaccggctgggccgggcggtggaggcggcggagtgcgtgcacgtgttc
aggcaggtggcggaggcggtggccgtcgcgcacgcgcagggggtggccgtgggcagcgcg
cgaccgtcgtgcttcgtcgtgtcgccgcccttcgcgcgcgtcgccttcatcgagtccgcc
tccggctccgacgcctcgggttcgtgctcgggctctgatgcctctgaggacgccgacccg
gatgcctcccctccgcggcgacgcgacggcgccggccgtggtgaggaacgcgccgggaag
tcgttcccgctcaagagcgtgctggccatggagctcaactggtacaccagccccgaggag
gcggacgacagcgccgctaccttcgcctctgacgtctacagactgggtgtgctcttgttc
gagctgttctgtacattcgaaaccatggaagacaagatgcgggcaatggcgaatctgcgg
caccgggtgttgccaccacagttgctgctcaaatggcccaaggaagcatccttctgccag
ttgctaatgcaccctgtgccagaaaccagaccgaagatgagtgaggtgttgcagagtgag
ttccttaatcagtcaaggaatagcctggaagagcgtgaagcggcacttaggttacgcgaa
gagatagaagaacaagaattattgctggattttcttcagcagttgcagaaaagaaagcag
gatatagcagacagtttgcaggacactgttgctttcctctcttctgacatcaatgaggta
ctccaccagcaatctgcacttggccactgtgtgaacttctcatacgatttggataaagag
gtgtgctctggaactgttgaagatcagagtgattgcggatccaggaagcgattcagacct
gagctgcaaggtgttgacatggaggaaaataatcgtagtgtggaagaatgttcaagaaca
gtgccatcctctgagttaatccaggaaagtgttctgtcaaaaagctccaggttgatgaag
aacttaaaaaaacttgaaacagcttattttctaacaaggtccaagttggcaaagcaagtt
ggcaaccaaataagtagtcatcaagttgttaagagggctactggttcagctattgggact
gagggaagttcaatagatgatttttctttggaaaggcaatatggtagaaggcaaagaggc
tgggtgaactcatttcttgaggggttgtgcaagtacttgtcattcagtaagttgaaagtt
cgggcagaactgaagcattgtgatttgctgaactcgtcaaacttagtatgctccgtaggg
tttgaccgggatagagagttttttgcaactgctggtgtaaataagaagataaaagtgttt
gagtataatatgattgtaaatgaacaccgtgatattcactatcctgtggtagagatgtct
aatagatcaaaactgagctgtatttgctggaacagttatatgaagagccatatagcatct
agtgattttgagggtatagtacaggtttgggatgttactaggagtcaagtttttgttgag
atgagggagcatgagcgacgtgtgtggtcggtggacttctcaattgtggacccaacaaaa
ttggtcagtgggagtgacgatcgatctgtgaagctgtgggatatgaatcaggctgggagt
attggcactattaggacaagggcaaacgtgtgttctgtgcaatttcaacctgattctgct
cgctccattgccatcggctctgcagaccacaaaatttactgctatgatcttcgtaacata
cgagctccttattgtacactagttgggcacacaaagactgtaagctatgttaagtatctg
gatgcatcaacaatagtatctgcatctactgacaactcattgaagctttgggacctatcg
atgagtcaaggaaggataattgacagtccacttcaaacatttacggggcatacaaacaca
aagaactttgttggcctttccatatctgatggttacatcgctactggctctgaaacaaat
gaggtttttgtctaccacaaagaatttcccatgccagtgttggcatataagttcagcgtg
acggatcctatatcaggccaggagattgatgatcagtcacagttcatctcatgcgtctgt
tggagagggcagtcttcaactcttctttctgcaaactccagcggcaacattaagatctta
gaaatggactaa
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