Miscanthus floridulus: 136456627
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Entry
136456627 CDS
T10264
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
mflo Miscanthus floridulus
Pathway
mflo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
136456627
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mflo03019
]
136456627
03012 Translation factors [BR:
mflo03012
]
136456627
Enzymes [BR:
mflo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
136456627
Messenger RNA biogenesis [BR:
mflo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
136456627
Translation factors [BR:
mflo03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
136456627
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
R3H
Helicase_C
HA2_C
HA2_N
Ank_2
nSTAND3
ATPase
Ank_5
AAA_19
AAA_22
Rad17
AAA_23
AAA_25
ResIII
AAA_7
AAA_14
PhoH
NPHP3_N
AAA_16
Motif
Other DBs
NCBI-GeneID:
136456627
NCBI-ProteinID:
XP_066312652
LinkDB
All DBs
Position
6:113665439..113674384
Genome browser
AA seq
1015 aa
AA seq
DB search
MVHPSGVPVRPSSLRYPAVSPRSRFSFGAPQQRSVNRATAAEARHRRSIQTALAASKGPS
QPPSSPLDDDNGHEDDRMGRKGRKGKGAAAGAAAGGSGGMREATLVRVSKVLEDFRASNA
EVYTFEPDISKQERAAIHEMCRKTGMISKSSGNGTKRRLSVYKRKQKRGPEMEEGPSYLG
FSEEARHVLQDLFMHYPPGDADLNGDFDRNSSDKAANIKWKTDSAFCRPAMSKLDITKKV
EMLASKVNGSDQLRKIMEDRTKLPISSFKDVITSTLENHQVVLISGQTGCGKTTQVPQYI
LDHMWGKGESCKIICTQPRRISAISVAERISAERGEAVGDTVGYKIRLESKGGKNSSVLF
CTNGVLLRLLIGRGTNTSKARNWKRSLDDAILGITHIIVDEIHERDRFSDFMLTILRDLL
PVYPHLRLVLMSATIDAERFSQYFNGCSVIQVPGFTYPVKTFYLEDVLSILQSAGGNHLN
TTSDKKESNVLSDDFKSSMDDSINLALVNDEFDPLLELISAEQNTEVYNYQHSETGVTPL
IVFAAKGQLGDVCMLLSFGVDCSAQDHDGKSALDWAQQENQQEVCEVIKKHTECSSEKST
EDNELLNKYLATINPEHIDTLLIERLLGKICVDSNEGAILVFLPGWEDINQTRERLFASP
FFRDSSRFLVLSLHSMIPSSEQKKVFKHPPAGVRKIILSTNIAETAVTIDDVVFVIDSGR
MKEKSYDPYNNVSTLHASWVSKASARQREGRAGRCQPGTCYHLYSRFRASSLPDYQIPEI
KRMPIEELCLQVKLLDSNCRIADFLKKTLDPPIPETVRNAIAVLQDLGALTQDEQLTELG
EKLGSLPVHPSTTKMLLFAILMNCLDPALTLACAADYRDPFVLPIAPDERKRAAAARVEL
ASLYGGFSDQLAVVAAFDCWRRAKDRGQESQFCAKYFVSSNIMYMLSNMRKQLQNELSQR
GFVPADASACSLNSKDPGTQVSMKMQVWKSCMLLDSFNMFLFLYVNYVRVSFVKH
NT seq
3048 nt
NT seq
+upstream
nt +downstream
nt
atggtccacccgtctggcgtgcccgttcgtccgagctcgctgcgctaccccgccgtgtcg
cctcgctctaggttttccttcggcgcaccgcaacagcgcagcgtcaacagagcgaccgcc
gccgaggcccgacaccgccggtccatccaaaccgcgctcgccgcatcgaaggggccctcc
caaccgccgagctcgcctctagacgacgacaacgggcacgaggacgaccggatggggagg
aaggggcggaaggggaagggcgcggcggccggggcagccgccgggggtagcggcggcatg
agggaggcgacgctggtgcgcgtctcaaaggtgctcgaggacttccgcgcctccaacgcc
gaggtgtacacatttgaacctgatatatccaaacaagagcgagctgcaatccatgagatg
tgtaggaaaacgggcatgatatccaaaagttctgggaatgggacaaagcgacgcctttct
gtttataaaagaaaacagaagcgggggcctgaaatggaagaaggccctagctaccttggg
ttttctgaagaggcaaggcatgttttgcaggatttatttatgcattaccctcctggtgat
gctgatttaaatggggattttgaccggaattctagtgataaggctgcaaacatcaaatgg
aaaacagatagtgcgttttgcaggccagcaatgagtaaacttgatataacgaagaaagtc
gagatgcttgcctctaaagtaaatggatccgaccagttgagaaagatcatggaagacaga
acaaaacttcctatttcatccttcaaggacgtcatcacttcaactttggaaaatcaccag
gtggttcttatttctggacaaacaggctgcggtaaaaccacccaggtgcctcaatacatc
ttggatcatatgtggggcaagggtgaatcatgtaagatcatatgcactcaaccacgtcgg
atatcagctatttcagttgccgagcgaatctctgctgaaagaggagaggctgttggtgac
accgttggatataagatacgtttggagtcaaaaggagggaagaattcatcagtcttgttc
tgcacaaatggcgttcttttgagattactgataggaagaggaactaacacttcaaaagca
cgaaattggaaacgctcattagatgatgcaattttgggaataacacacatcattgtggat
gaaatccatgaaagggataggttttctgatttcatgctgactattctaagagacttgttg
ccagtgtatcctcatcttcgtttggtactcatgagtgcaacaattgatgctgagcgtttt
tcgcaatatttcaatggatgttcagtcattcaagtccctggttttacctatcctgtcaaa
actttctatttggaggatgtgctttctattctacagtctgcgggtggtaatcatcttaat
actaccagtgataaaaaagagagcaatgttttaagtgatgatttcaaaagctcaatggat
gattcaattaacctggctttggtcaatgatgaatttgatcctctccttgagcttatttct
gcagagcagaacacagaagtctataattaccagcattcagagactggtgtaacaccttta
attgtttttgctgcgaagggtcagcttggggatgtctgtatgcttttatcttttggtgtg
gattgttcagcacaggatcatgatggaaaatccgcattagattgggcacaacaagagaat
caacaagaggtctgtgaagtaatcaagaaacatacggagtgtagttcagaaaaatcaact
gaagataacgagctgcttaataagtacttggcaactattaatccagagcacattgatact
ctgctaattgaacggttgcttggaaaaatttgcgtggattccaatgaaggagccatcttg
gtatttcttcctggctgggaagatatcaatcaaacacgtgaaaggttatttgcttctcca
ttctttcgggattcatcaagatttcttgtgttgtctcttcattctatgatcccgtcttcg
gagcagaaaaaagttttcaaacatccaccagcaggggttcgtaaaattattctctcaacc
aatattgcagagactgctgtgacaattgatgatgttgtgtttgtcatagatagtgggaga
atgaaagagaaaagttacgatccatacaataatgtgtccacgcttcatgcttcttgggtt
tcaaaagccagtgcaagacaacgcgaagggcgtgctggccgatgtcagccaggaacttgc
tatcatctttactcaaggtttagagcatcatccttgccagactaccaaattcctgaaata
aaaagaatgcccattgaggaactttgtttgcaggtcaaactgcttgattcaaactgcaga
atagcagactttctgaagaaaaccttggaccctccaattccagaaactgtaagaaatgct
attgctgtgcttcaggatcttggtgctttaacacaagacgaacaactaacagaattagga
gaaaagctgggttccctgccagtccatccatccaccaccaagatgctcctgtttgctata
ttaatgaactgcctggatccagcattgacattggcatgtgcagctgattatagagatcca
tttgtccttccaatagcgccagatgagaggaaaagggcagctgcagcgagagttgagctt
gcttcattgtatggtgggttcagcgaccaacttgctgttgtggcggcatttgactgctgg
aggcgtgccaaagatagaggccaagaatctcaattttgtgcaaagtactttgtctcttca
aacatcatgtatatgctatcaaacatgaggaaacaacttcagaatgaactgtctcaaaga
gggtttgtccctgcagatgcatctgcctgcagcttaaattctaaagatccaggtactcag
gtctctatgaaaatgcaagtctggaaaagttgtatgctcttggattcctttaatatgttc
ctgtttttgtatgtgaactatgtacgtgttagttttgtgaaacactaa
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