Miscanthus floridulus: 136457006
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Entry
136457006 CDS
T10264
Name
(RefSeq) endoribonuclease Dicer homolog 3a isoform X1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
mflo Miscanthus floridulus
Brite
Chromosome and associated proteins [BR:
mflo03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
136457006
microRNA pathway
RISC loading complex
136457006
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GFIT
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NCBI-GeneID:
136457006
NCBI-ProteinID:
XP_066313140
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Position
6:complement(131790986..131802909)
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AA seq
1658 aa
AA seq
DB search
MEAAAAADAGDMNTLKRPSNSSPPEGETDKHKRQKRECQDFSPRRYQLDVYEVARRQNTI
AMLDTGAGKTMIAVMLIKHFGKISKANNDRKLIIFLAPTVQLVTQQCEVIKSYTDFEVEH
YHGAKGVDQWKAHSWQQQLLKYQVMVMTPQVLLDALRQAFLILDMVSLMIFDECHHATGN
HPYTRIMKEFYHGSEHKPNVFGMTASPIIRKGVSSDLDCENQLSELENILDSKIHTVVDR
EEIELCVPSAKEVNRYYEPRTVSFEDLSEELEILCSKYDGLIVQLHNRSINQYKDADEIT
KESRRRLSNSLAKICYCLEDAGLLCASEATKICIERGQRKGWLKGGSDTTDQQSDPNGPI
LFAEISMLHMKFFQEVLDVIDKRLQQQQGIDALLNSESGCVEATKMGYISPKLYELMQVF
LSFSDSDNVRCLIFVDRKISARVIERTMKKIGRLSCFRVSFLTGGCSSVDALTPKMQKDT
LDSFRSGKVNLLFTTDVAEEGIHIPDCSCVIRFDLPRTTRSYVQSRGRARQRDSQYILMI
EQGNVKQNDLISGIMRSKASMAEIASNREPEDSHPNFFPIEEINEYHISSTGAKITTDSS
ISVLNQYCDKLPKDKYYTPRPTFQFTHYGDGYESTLTLPSSAMFQLLVGPKARNMQKAKQ
LVCLDACKRLHQLGALDDHLSPSVQEPPLEISSKSSISTSGAGLGTTKRKELHGTTKVLS
MSGSWGSDRSVTKLQGYKLNFVCDQVGQKYSDFILLIDANIAKEAATLDIDLYLHDKMVK
ASVSPCGPLELDARQMEQTKLFQELLFNGLYGKLFIGSKASKTPREFILKKDDAFLWNKE
NMYLLLPVDSTLDSHRSVCINWNVIDAAATTVELMRSIYSDGKRNLIGKLNHEKNGEDFI
RLANKSCKANDLGNMVVLAIHTGKIYTVVKISDLYANSKFDGTSDKKEAKFRTFAEYFEK
KYNIFLCHPLQPLLVLKPTHNPHNLLSSKNRDEGNVVENKNRANSLVHMPPELLIPLDLP
VDVLRVFYLFPSLMHRLESLMLASQLRSEIAYTDSDISSFVILEAITTLRCCEDFSMERL
ELLGDSVLKYAVSAHLFMTFLNKHEGQLSSRRQETICNATLYRLGIERRIQGYIRDAAFD
PRRWLAPGQLSSRPCPCECPVKSEVITEDIHRIDDKSIIIGKACDKGHRWICSKTISDCV
EAIIGAYYVGGGLKAAFAVLKWLQIETEIEEELIMEALSSASVRNYLPKVDVVELLEAKL
GYTFQVKGLLIEALTHPSQQESGATYCYQRLEFLGDAVLDILITRHLFLSHKDTDEGELT
DLRSASVNNENFAQVAVKHNLHQFLQHSSGFLQDQITEYVNSLEGSSMDRTSLLSSGSSR
GPKVLGDIVESIAGAILIDSKLDLDLVWWVFKPLLSPIVTPENLELPPFRELNEWCDKNG
YFIGIKCENRGDNTMAILNLQLKDLLLVRQGCGKNKVDAKAHAASLLLRDLEEKGLIIPK
NASRVEQFEKNSGTTKHCNNLLDVMDTQNVAPPRQKELTVSNTAPGSVLDKPLVVKVKLS
KGGPRVSLYESCKKLQWPMPTFEFVKVEPSVCSSGDSSQKVAPQGFAFASTITLHIPNGD
VISLTGDGRADKKSSQDSAALLMLYELQRQGRFQVQEV
NT seq
4977 nt
NT seq
+upstream
nt +downstream
nt
atggaggccgccgccgccgccgatgcaggagacatgaatactttgaagaggccatccaat
tcatcgcctccagaaggcgaaacagacaagcataaacggcagaagagggaatgccaggat
ttctctcccagaaggtaccagcttgatgtctatgaggttgctaggaggcagaacacaatt
gcgatgcttgacacaggagctgggaagacaatgattgctgtcatgctcatcaagcatttt
gggaagatcagcaaagcaaataatgatcgaaagctcatcatattccttgcaccaacagtt
caactcgtcacacagcaatgcgaggttattaagagctacactgattttgaggtggagcat
tatcatggtgcaaagggtgttgatcaatggaaggctcatagctggcaacagcagctctta
aaatatcaggttatggtcatgacaccacaggtgttgctagatgctttacgccaagctttc
ttgatcctggacatggttagtctcatgatatttgatgaatgccatcacgcaactggtaac
cacccatatactaggataatgaaggagttctatcatggatcagagcataaaccaaatgta
ttcggtatgacggcctctcctatcataagaaaaggggtctcctctgatttggattgcgaa
aatcagctatctgagctggaaaatattttagattccaagatacacactgtggtggataga
gaagagatagaactttgtgttccttctgcaaaagaagtgaacagatactatgagccgaga
actgtttcttttgaagatttaagtgaagaactggaaattttgtgttccaagtatgatggg
ctgatcgtacaattgcataaccggtcgatcaatcagtacaaagatgctgatgaaataaca
aaagaatcacggagacgcctctcaaattctttagcaaagatttgctattgccttgaagat
gctggtcttctttgtgctagtgaggccactaaaatctgcattgaaaggggtcagagaaaa
ggttggctgaaggggggcagtgacaccactgatcagcaaagtgatccaaatggaccaatc
ctgtttgcagaaatttcaatgcttcatatgaagttctttcaggaagtgttggatgtaatt
gacaaacgcctccaacagcaacaaggaattgatgcccttttgaactcagagagtggatgt
gtggaagcaacaaagatgggctatatttcaccaaagctctatgagctcatgcaagtattt
ctctctttcagtgactctgataacgtccgatgccttatttttgtggatcgaaagattagt
gctagagtcattgagcggacgatgaagaaaataggccgactctcctgtttcagagtctct
tttctaactggagggtgttcttcagtggatgccctcacccctaaaatgcaaaaggatacg
ctggattcgttccgctctggaaaggtcaacttattgtttactacagatgttgcagaagag
ggtatacatattccagactgctcgtgtgtaataagatttgatttgccaaggactacccgc
agctatgtgcaatcacgtggacgggcccgacagagggactctcagtacatactaatgatt
gaacaggggaatgtgaaacaaaatgatctaatatctgggattatgagaagtaaggcctcg
atggctgagattgcttcaaaccgagagcctgaggattcacaccccaatttcttccccatt
gaagaaataaatgaataccatataagctcaacaggagccaaaataactactgattctagc
atcagtgttctcaaccagtactgtgacaagctcccaaaggacaagtactacaccccaaga
cccacgtttcagttcacccattatggtgatggttatgagtctactttaacactaccatct
agtgccatgtttcaacttttggtaggtccaaaagcaagaaacatgcagaaagcaaagcag
cttgtttgccttgatgcatgtaagaggctgcatcagctcggagcacttgatgaccatctt
tctccatcagttcaagagccgcctctggaaatttcaagcaagtctagtatctcgacatcc
ggtgcaggtttaggtacaaccaaacggaaagaactgcatggtacaaccaaagttctttct
atgtctggctcttggggttcagatagaagtgtgactaagcttcaaggctacaagttaaat
tttgtttgtgatcaagttggtcaaaaatattctgactttatccttttaattgatgcaaat
atagcaaaagaagccgctactttagatattgatctatatttgcatgacaagatggtaaaa
gcttcagtttctccttgtgggcctcttgagctggatgctcggcagatggaacaaacaaaa
ttatttcaggaacttctctttaacggtttgtatggaaaactgtttattggatcaaaagca
tcaaaaaccccaagggagttcattctcaagaaagatgacgcgttcctttggaataaagaa
aatatgtatttgcttttacctgtggattctactttggattctcatagaagtgtttgcatc
aattggaatgtaattgatgcagcggctacaactgttgaactcatgagaagcatttattct
gatggcaaacgcaatttaattggcaaacttaatcatgaaaaaaatggcgaagattttatt
cgtttggctaacaagtcatgcaaggctaatgatcttggaaatatggttgttctagcaatt
cacactggaaagatatatactgttgttaagatatctgatttatatgccaatagtaaattt
gatggtacatctgacaagaaagaagcaaaatttcggacatttgcagaatattttgagaag
aagtataatatatttctttgtcatcctttacaaccattgctagtgttgaaacccacccat
aatccacacaatcttctttcctcaaagaatagagatgaaggcaatgttgtggaaaataaa
aatagggcgaatagccttgttcacatgcctccagagttgttgattccccttgatttacct
gttgatgttttgagagtattctatttgtttccatctctaatgcatcgtcttgaatcacta
atgctagccagccaactaagaagtgaaattgcatacacagattctgatatatcaagcttt
gtgattttggaagctattacaacacttagatgctgcgaggacttctctatggagcgttta
gagttattgggggactctgttcttaagtatgcagtgagtgcccatcttttcatgacattt
cttaataagcatgaggggcagttatcgtccagaaggcaagaaacaatatgtaatgccaca
ctttataggcttggtattgaacgcagaatacagggttacatacgtgatgctgcatttgat
cctcgtcgatggcttgctcctggacagctgtccagccgtccctgtccttgtgaatgccca
gtaaaatctgaggttataactgaggatattcataggattgatgacaaatctataattata
ggcaaggcgtgtgacaagggacacagatggatatgttccaaaaccatctctgattgtgtt
gaggctataattggggcctattatgtgggaggggggttaaaagcagcttttgctgttctc
aaatggttgcagattgagactgaaattgaggaagagctaattatggaagccctgtcgagt
gcttcagttcgaaattatcttccaaaagttgatgtagttgaattgcttgaagcaaaacta
ggctacacctttcaagtgaaaggtttgctaatagaggctctcacccacccatcacagcaa
gaatctggagcaacatactgctaccagcgcttggagttccttggtgatgcagtcttggat
attttaataactcgccatttgttccttagtcataaagacacagatgagggggagctgaca
gatttacggtctgcatcagtaaataatgagaattttgcacaagttgcggtaaagcacaat
ctccatcagtttcttcaacattcttctgggttcctacaagaccaaatcactgaatatgtg
aatagtctggaaggttcatccatggacagaaccagccttttatccagtggatcatctagg
gggccaaaagttctaggtgatattgtagaaagtattgcaggtgctattcttattgatagc
aaacttgatttggatttagtttggtgggttttcaaacctcttctttccccaattgtcaca
cctgagaatttggagttacccccattcagagagcttaatgagtggtgtgacaagaatggg
tactttattggaattaaatgtgaaaatcgaggagacaacacaatggctattcttaactta
caactcaaggacttgcttcttgtgaggcaaggttgtgggaagaacaaagtagatgcaaag
gcacacgcagcttccttattgctcagggatctagaggaaaaaggacttataattccaaag
aatgcaagcagagtggaacaatttgaaaagaattctggtactacaaaacattgcaacaac
ttgcttgatgttatggacacacaaaatgtagcaccacctaggcaaaaggaactgactgtg
tcaaataccgctcctggctctgttcttgataaaccattggttgtgaaggttaagttgagt
aaaggaggacctcgtgtatccttgtacgagtcgtgtaaaaagcttcagtggccaatgcct
acgtttgaatttgtgaaagtcgaaccaagtgtgtgctcttccggtgattcctcacaaaag
gttgcaccccaaggattcgcatttgcttcaacaataacattgcatataccgaacggcgat
gtcatcagcctcacaggagacgggcgtgcggataagaagagctcacaggattctgctgcg
ttgctcatgctctatgagctgcagcggcaaggtagattccaagtccaagaagtatga
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integrated database retrieval system
