Miscanthus floridulus: 136457022
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Entry
136457022 CDS
T10264
Name
(RefSeq) THO complex subunit 2-like isoform X1
KO
K12879
THO complex subunit 2
Organism
mflo Miscanthus floridulus
Pathway
mflo03013
Nucleocytoplasmic transport
mflo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
136457022
09122 Translation
03013 Nucleocytoplasmic transport
136457022
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mflo03019
]
136457022
03041 Spliceosome [BR:
mflo03041
]
136457022
Messenger RNA biogenesis [BR:
mflo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
136457022
Spliceosome [BR:
mflo03041
]
Complex C
Other components
EJC/TREX
136457022
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
136457022
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
Motif
Other DBs
NCBI-GeneID:
136457022
NCBI-ProteinID:
XP_066313158
LinkDB
All DBs
Position
6:complement(133077782..133113447)
Genome browser
AA seq
1770 aa
AA seq
DB search
MSPPMQAPNYKHITEECLREWKGQSAGAFRLPDPVPMARFLYELCWAIVLGDLPRQKSRV
ALESVVFVEEERREEELGSVLADIIAHLGQDITISGEYRSRLVKMTKSFLESSITAPRLL
QERCEEDFLWEVEQSKLKGQDLKSKEVRVNTRLLYQQTKFNLLREESEGYAKLVTLLCQV
GSDLACQNSSSVTISIIKSLIGHFDLDPNRVFDIVLECFELYQDSNIFHQLIPLFPKSHA
AQILGFKFQYYQRLDVNSPVPSGLFRTAALLIKSGFIDLDNVYSHLLPNDDEAFEHFDSF
ISRRIDEANKIGKINLAATGKDLMDDEKQEITIDMYTALEVENDIVAERAPEMEKNQKLG
LLLGFLSVHDWYHAQLLFERLAHLNPVEHIEICDGLFRMIEKTMSSAYHIVCHLYYYLPP
RNDADQTGTSALSLSSFDLPKEFFQMLTACGPYLHRDTQLLQKVCRVLKAYYHSSKESTR
AANVVSPESQIEEALGSCLSSLQLIPANPAVDMEIWGVLSLLPYEARYRLYGEWEKETEE
NPIVLAARQTAKLDTRRLLKRLAKENLRPLGRMVAKLAHANPMTVLRTIVQQVEAYRDMI
TPVVDAFKYLTQLEYDILQYIVIERLAQGGRAKLKDDGLNLSDWLQCLASFWGHLCKKHN
AVELKSLLQYLVNQLKKGVGIELVVLEELIQQMANVQYTENMTEEQVDAMAGSETLRQQA
SLFGATRNYKVLSKSTNRLRDSLLPKEEPKLAVPMLLLIAQHRSKIIINADATYIKVVSE
QFDRCHGILLQYVEFLSSAVTPTAYAQLIPPLQDLVHKYHIEPEVAFLIYRPVMRLFKSS
NGGDTCWPLEDNEEGESVSSDDLILHLDLSQEPIVWSDLLNTVQSILPAKAWNSLSPDLY
ATFWGLTLYDLHFPKDRYDTEIKKLHDNLKQLEDNSDNSSIAISRRKKDKERIQDLLDKL
NSESQKHQQHIASVVQRLAREKDKWLSSSPDAMKINMEFLQRCIFPRCVFSMQDAVYCAT
FVQTLHSLGTPFFNTVNHIDVLVCKTLQPMICCCTEFEAGRLGRFFHDTLKMAYYWKSDE
SVYERECANKPGFAVYFRYPNSQRVSYGQFVRVHWKWSSRITKALNQCMQSKEYMEIRNA
LIVLTKISSVFPVIRKSGVNLEKRVAKLKGDEREDLKVLATGVAAALAARKSSWLSEEEF
GMGHIDLKPATARSVLGNQSADPSMAKDQNARAKSIDNRHERSEGAMKPDVQQKKSSVPA
NGSDIQIPSSSVQGKSSVVVRAVDEPPKPVSDEGVKVSTKPTSESETRATQKRAHNAGKV
MKHDVAKEDAKAGKSTSWNVNQQVSTVDREAMPHAADAAQETNTTISDGNLHPVQRKGSS
SSQRNAVLVTHNGAANPSGESTDLIDSTVRQQKRPALIEEQDRSGKRRKGENEPDLSEHH
VDKEKSLDSRGGDKFRSVDHEKSANEEQNLSRADRMKEKSDDKYDRDPREKLDRAERRRG
EDAIERSTDRLSERRERSIERLQERVTDKAPEKGREDRNKDERNKVKYAEPSVDRTHSSD
ERFRGQSLPPPPPLPASFVPQSVGANRREEDADRRGGSSRHVQRSSPRRDEKERKQSEEN
TSSFQDDGKHRREEDIRDRKREDRDILSNKVDDRDREKGTSLKEDSDPSNASKRRKIKRD
QTSLEAGEYAPSAPQPPSHGSGSSQLSDVRERERKGLISQHRTSHADDLPKTHGKDTASK
SSRRESDQMHEREWEEEKRPRTETKRKHRK
NT seq
5313 nt
NT seq
+upstream
nt +downstream
nt
atgtcgccccctatgcaggcacccaactacaagcacatcacggaggagtgccttcgcgaa
tggaagggccagtccgccggcgccttccgcctccctgatccggtgcccatggcgcgcttc
ctctacgagctctgctgggcgatcgtgctgggcgacttgccgcggcagaagagtcgggtg
gcgctggagtcggtggtgttcgtggaggaggaacggcgggaggaggagcttggctctgtg
ctcgctgatatcatcgctcacctaggacaggatattacaatctctggtgaatatcgcagc
cgtcttgttaaaatgactaagtcgtttctggagtcctcgattactgcgcctaggcttctg
caagagcgatgtgaagaagatttcctttgggaggttgaacagagtaagctgaaaggacag
gatttaaaatccaaggaggttagggtcaacacacggcttctttaccagcaaactaaattc
aacctcttacgggaggaaagtgagggctatgccaagttggtgacactcctttgtcaagtt
ggttcagatctggcttgccagaattcttcttcggttacgatcagcattataaagtcattg
attggccattttgatctggacccaaatcgtgtatttgatattgtgttggagtgctttgaa
ctttatcaagatagtaacatctttcatcagctcatacctctttttccaaagtcccatgct
gctcaaattttggggttcaaattccagtactatcaacgattggatgtcaacagccctgtt
ccatctgggcttttcagaacagcagctttattgatcaaatctggattcattgaccttgat
aatgtctattctcacttgcttccaaatgacgacgaggcgtttgagcattttgattctttc
atttcgagaagaattgatgaggctaataaaattggcaaaatcaaccttgctgctactgga
aaggaccttatggatgacgagaaacaagaaatcactatcgatatgtatacagcattggag
gtggaaaatgatatagttgcggagcgagcccctgagatggagaagaaccagaaacttggg
cttcttcttggttttctctctgtgcatgactggtatcatgcacaactactctttgagcgt
cttgcacacctaaatcctgttgagcacattgaaatctgtgatggattatttagaatgatt
gaaaagacaatgtcttcagcctatcatatagtttgtcacctgtattattacttgcctcct
agaaatgatgctgaccagacaggcacatctgctctgtctttaagttcatttgatctgcca
aaggagtttttccaaatgctcaccgcttgtggaccatatcttcatcgtgatactcaatta
cttcaaaaggtttgcagagtattaaaagcgtactaccactcatcaaaagagtcaacacgt
gcagcaaatgtagtttcaccagaatctcaaattgaggaagcacttggctcgtgcttgtct
tcgttgcagcttatccctgctaatcctgctgttgatatggagatatggggggttctttcc
cttcttccatatgaggcccgttatcgtctgtatggtgaatgggagaaggagaccgaagaa
aacccaattgtccttgctgcaaggcaaactgcaaagctggacaccagaaggctcctaaaa
cggttggctaaggaaaacctgaggccacttggccgcatggtggctaaacttgcccatgcg
aatcccatgactgtgcttcggacaattgtccaacaggttgaagcatacagggatatgatt
acaccagttgtggatgcatttaagtacttgactcagctggagtacgacatcttgcaatat
attgtcattgaacgcttggcacaaggtggtcgtgcgaaacttaaagatgatggacttaat
ctctcagattggcttcaatgtcttgcatccttttgggggcacctgtgcaagaagcataat
gctgtggaactgaaaagccttttgcagtatcttgttaatcaactgaagaagggtgtgggc
attgaacttgttgtcctggaggagctcattcagcaaatggcgaatgtgcagtacaccgag
aacatgacagaggaacaggtcgatgctatggcaggaagtgagactttgcggcagcaagct
tcactgtttggagcaacaagaaactataaggtgttgagtaaatccacaaataggctaagg
gattcgttgcttccaaaagaagagcccaaacttgcagttcctatgttactgcttattgct
cagcatcggtccaagattataataaatgcagatgccacatatatcaaagtggtcagtgag
cagtttgatagatgccatggaatacttcttcagtatgttgagtttctttcaagcgctgtg
actccaactgcctatgctcaactaatacctcctttgcaagatctggtccataaataccac
attgaaccagaggttgctttccttatataccgcccagtgatgcggctttttaagagcagt
aatggaggtgacacttgttggcctcttgaggacaacgaggaaggagaatctgtatcatct
gatgatcttatcttacatcttgacttgtctcaggaaccaatcgtgtggtcagatcttctt
aacacagtccagtcaattttgccagcaaaagcttggaacagtctttcaccagatttatat
gctactttctggggcttaacactctatgatcttcacttcccaaaagaccgttatgataca
gaaatcaagaagctgcatgataatctcaaacaattggaggacaactcagataactctagc
attgcaatttcaagacgtaagaaggacaaggagagaatccaagatttacttgacaaactg
aacagtgaatctcagaagcaccagcagcacattgcatctgtggtccaaaggttagcccgt
gaaaaggataagtggttgagctccagtccggatgcaatgaaaatcaacatggagttccta
cagcgctgcatattcccacgatgtgtttttagtatgcaagacgcagtatattgtgctaca
tttgtccaaacactacactcccttgggactcctttctttaacacagtcaatcatatcgat
gttctcgtctgtaaaaccctacagccaatgatatgctgttgcacggaatttgaagctggc
cggcttggaaggttttttcatgatacgttgaagatggcctactattggaagagtgatgaa
tctgtttatgagcgtgaatgtgcaaacaaaccaggttttgcagtgtacttcagataccca
aacagccagcgtgtatcctatggtcagtttgttcgggttcattggaagtggagttcaaga
atcaccaaagcgcttaaccaatgcatgcaatcaaaagaatacatggaaatccgaaatgcc
cttattgtgctcacaaagatttctagtgtctttccggtgattcgtaaaagtggtgtcaat
cttgagaaacgggttgctaaactaaaaggggatgagagagaagatcttaaagttctagcc
actggtgtagctgctgctttagctgctcgcaagagttcttggctatctgaagaagagttc
ggcatgggacacattgatctgaagccagcaacagcaagatctgtgcttggaaaccagtca
gcagatccctcgatggcaaaagatcaaaatgcccgtgcaaagtctatagataataggcat
gaaaggtcagagggtgctatgaagcctgacgttcagcaaaagaagagctctgtgcctgca
aatggatctgatattcaaataccatcctcctccgtacaagggaaatcttcagtggttgta
cgtgcagtggatgaacctccaaaacctgtgtctgatgagggggttaaagtttctacaaaa
cctacttcagaatctgagacaagagcaacacaaaagcgtgcacacaatgctgggaaggta
atgaagcatgatgttgcaaaggaagatgcaaaagctgggaaatctactagctggaatgta
aatcaacaagtctcaactgttgatagagaagcaatgcctcatgcagctgatgctgcccaa
gaaaccaataccactattagcgatggtaacttgcatccagtgcagcggaagggttcgtca
tcttcccaaagaaatgcagttttggttacacataatggagcagctaacccctctggtgag
tctactgatctgattgactctaccgtgagacagcaaaaaagacctgctctgattgaggag
caagatagatcaggtaaacggaggaaaggagaaaatgaacccgatttgagtgaacaccat
gtagacaaggaaaagagtttggactcacgtggcggagataagtttcgttcagtggatcat
gagaagagtgctaatgaggaacaaaacttaagtagggcagacagaatgaaagagaaatct
gatgataaatatgacagagatcctagggaaaaattagatcgagctgaaaggcgtcgtggg
gaagatgccattgaaagatcaacagatagattatcggagaggagagaacgctctattgaa
agattgcaagagagagtgacagataaagcccctgaaaaaggtagagaggatagaaataag
gacgagaggaataaagttaaatatgctgaaccttcggtggaccggacacattcttctgat
gaacgatttcgagggcaaagtttgccaccgcccccacctcttcctgcaagttttgtaccc
caatcagttggtgccaaccgacgtgaagaagatgctgaccgaaggggtgggagctccagg
catgttcaaaggtcatctcccaggcgcgatgagaaagaaaggaagcagtcagaggagaat
acttcgtcatttcaggatgatgggaagcacagaagagaggaagatattcgtgatagaaag
cgtgaggatagggatatattatcaaacaaggtagatgacagggatagggaaaaggggact
tctttgaaagaagacagtgaccccagtaatgcttctaaacggagaaagatcaagcgagac
cagacttctttagaagctggggaatatgcaccttctgctccacagcctccctcccatgga
tccggcagctcacaattgtctgacgtgcgagaaagagaaaggaaagggttaatttcacaa
catcgtacctcgcacgctgatgaccttcctaagacacatggcaaggacacggcaagcaag
tcaagtcgtcgagagtctgaccaaatgcacgagagggaatgggaagaggaaaagcgacca
agaactgaaacaaaaaggaagcatcggaaatag
DBGET
integrated database retrieval system
