Miscanthus floridulus: 136461506
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Entry
136461506 CDS
T10264
Name
(RefSeq) protein PAT1 homolog
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
mflo Miscanthus floridulus
Pathway
mflo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
136461506
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mflo03019
]
136461506
Messenger RNA biogenesis [BR:
mflo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
136461506
mRNA degradation factors
5'-3' decay
Decapping complex
136461506
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
136461506
NCBI-ProteinID:
XP_066316869
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Position
6:complement(1879274..1885955)
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AA seq
815 aa
AA seq
DB search
MLPTGEPTSGSVPLRQGHFLLEPGPPPAAVPAANANTSNTGDTRFDASQYAFFGNNVLED
IELGGFEDDNDSNAAFTGLDDLERPLSSQEIALEAEDSSFSDLADTFSKLRRDVNLPKHI
GVNNLGTSFSRESSAAADWAPEFESPLWPDQYVQGAKQGLNGNGWWPPQRRSSLLADSRL
HRTSSSPQQQEQHNHNEPVLGPRPSPLHRTSSYPQKEPQYNPAEVIPAPNAPYMSNHPPG
GPPNSVPRQPHQMNMPSFNEFQMHMSAQSDAPFSQFPRGGTPPESLFGGNRGHMISTGFS
TNSSGQQGHLLNNMPNLLPNHLQRPNTFMPHQMLTTRQQNGMLPIQQSSQQSSRTQAHMF
GPQHPPQMMNRFDNFGMPEFSDPRTRSLMHHGRQSHHFPLQGSEFGIMKMGNGRSRFRSK
YMSTEELENILRIQHAATHINDPYIDDYYHQACLASRYVDGRSKHRFYPTLIRDPSSCAR
SKDEPHAYLKVDALGRLPFSSIRRPRPLLDVEPASATDDNSLISKPLDQEPLLAARITIE
DGLNLLLDIDDIDRLLQFSQQQDGGLQLKNRRQSLLGQLAESLQLVDPLGPNKNTHLSAN
DDLVFFRIVSLPKGQKLLSRYINLMVPGSDLARIVCMAVSRHLRFVFGNLPSDDGSAETV
TKLASAVAACIRGMDLSGLSACLAAIVCSSEHPPLRPLGYAAGDGATVIIKSVLDRATEL
LTELPAAPDYSAPNRALWQASFNAFFGLLTKYCVSKFDSMVHNMHKHPAAATAIRKELPV
ELLRASLPHTDEQQRRLLLEFAQRTVPVAGHSSDG
NT seq
2448 nt
NT seq
+upstream
nt +downstream
nt
atgctgccaaccggggaacctacctctggatccgtgcccttgcgccagggccactttctc
ctggagccggggcctccgccggcggcggtacctgctgccaacgcgaacacctctaataca
ggtgacactagatttgatgcatcacagtatgctttttttggcaacaatgtgctggaggac
attgaactaggtggattcgaagatgataacgacagtaatgctgctttcactggactcgat
gatttagagcgcccactttcttctcaagagattgcactagaggctgaagatagttcattc
tcagatcttgcagatacattctcaaagctaagaagagatgttaacctaccaaagcatatt
ggggtaaataaccttgggacttctttttcaagagaaagttctgctgctgctgactgggct
ccagaatttgaatccccactctggcctgatcagtacgtgcaaggtgctaagcaaggacta
aatggcaatggctggtggcctccacagcgccgttcttctctccttgctgattccagattg
cacagaacatcctcatcccctcagcaacaggaacaacacaatcataatgaacctgttctt
ggaccaaggccatctcctttgcaccgtacatcctcatacccacaaaaggagcctcagtac
aatcctgctgaagtcattcctgctccaaatgcaccatacatgtcaaaccatccacctggt
ggtccacccaattcagtgcctcgacaaccacatcagatgaacatgccatctttcaatgaa
tttcagatgcatatgtctgcacaaagtgatgccccattctcccagtttcctcgtggaggg
acacctccagagtcattgtttggtggaaaccggggccatatgatttcaacaggcttctca
actaacagcagtggacaacaaggtcatctgctgaataatatgccaaatttgctgccaaac
catctacaacgtccgaatacattcatgccccatcaaatgctaacaacacgccaacagaat
ggtatgctcccaattcagcaatcttcacagcagtcatcaagaacacaggcacacatgttt
ggcccccagcatccaccacaaatgatgaataggtttgataattttgggatgcctgagttc
agtgatccaagaacaagatcattaatgcaccatggaaggcaaagccaccattttcctctc
caaggctctgagtttggtattatgaagatgggtaatgggaggtcaaggtttagatccaag
tatatgtccactgaagaacttgaaaacattttaagaatacagcatgccgccactcacata
aatgatccatacatcgatgattattaccatcaagcttgtttggccagcagatatgtggat
ggaaggtcgaagcatcgcttctacccaaccttgattcgggatccatcatcatgtgcacgg
agcaaggatgagccacatgcataccttaaggtcgatgccctagggagactgccattttct
tccatccggaggccacgtccacttcttgatgttgaaccagcttctgcaaccgacgataac
tctcttatttcaaagcctcttgatcaggaacctctgctagctgctaggatcacgattgag
gatggactcaacctactacttgatatagatgatattgatcgcttgcttcaatttagccag
cagcaagatggtggtttacaacttaaaaacagaaggcaatctctccttggtcagctggca
gaatcactgcagttggttgatccactaggtccaaataaaaacacacatttgtctgcaaat
gatgatttggtattttttcgcattgtttctctacccaagggccagaaactactttcacgc
tatatcaacctcatggtacctggtagcgatcttgcaaggatagtttgcatggcagtatcc
cggcatctgaggtttgtgtttggaaatttgccatctgatgatggttcagctgagacagta
actaaactagctagtgctgtagctgcatgcattcgtgggatggacttaagtgggctcagc
gcttgtcttgcagcaattgtgtgctcgtctgagcatccacctcttcgaccccttggatat
gctgctggtgatggtgccactgtcatcataaagtctgtcctggatagagcaacagagctt
ctcactgagctgcctgctgcaccagactatagcgctccaaaccgagccctatggcaagca
tcgtttaatgctttctttgggctgcttactaagtattgcgtgagtaaatttgacagcatg
gttcacaatatgcacaagcaccctgctgctgcaacagcgatacgcaaggaacttccagtt
gagcttctgcgtgccagtcttcctcacacagatgagcaacagcgcagactattgcttgag
ttcgcccagcggactgtgcctgtcgctggccatagttctgacgggtga
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