KEGG   Miscanthus floridulus: 136461506
Entry
136461506         CDS       T10264                                 
Name
(RefSeq) protein PAT1 homolog
  KO
K12617  DNA topoisomerase 2-associated protein PAT1
Organism
mflo  Miscanthus floridulus
Pathway
mflo03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mflo00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    136461506
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mflo03019]
    136461506
Messenger RNA biogenesis [BR:mflo03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     136461506
  mRNA degradation factors
   5'-3' decay
    Decapping complex
     136461506
SSDB
Motif
Pfam: PAT1
Other DBs
NCBI-GeneID: 136461506
NCBI-ProteinID: XP_066316869
LinkDB
Position
6:complement(1879274..1885955)
AA seq 815 aa
MLPTGEPTSGSVPLRQGHFLLEPGPPPAAVPAANANTSNTGDTRFDASQYAFFGNNVLED
IELGGFEDDNDSNAAFTGLDDLERPLSSQEIALEAEDSSFSDLADTFSKLRRDVNLPKHI
GVNNLGTSFSRESSAAADWAPEFESPLWPDQYVQGAKQGLNGNGWWPPQRRSSLLADSRL
HRTSSSPQQQEQHNHNEPVLGPRPSPLHRTSSYPQKEPQYNPAEVIPAPNAPYMSNHPPG
GPPNSVPRQPHQMNMPSFNEFQMHMSAQSDAPFSQFPRGGTPPESLFGGNRGHMISTGFS
TNSSGQQGHLLNNMPNLLPNHLQRPNTFMPHQMLTTRQQNGMLPIQQSSQQSSRTQAHMF
GPQHPPQMMNRFDNFGMPEFSDPRTRSLMHHGRQSHHFPLQGSEFGIMKMGNGRSRFRSK
YMSTEELENILRIQHAATHINDPYIDDYYHQACLASRYVDGRSKHRFYPTLIRDPSSCAR
SKDEPHAYLKVDALGRLPFSSIRRPRPLLDVEPASATDDNSLISKPLDQEPLLAARITIE
DGLNLLLDIDDIDRLLQFSQQQDGGLQLKNRRQSLLGQLAESLQLVDPLGPNKNTHLSAN
DDLVFFRIVSLPKGQKLLSRYINLMVPGSDLARIVCMAVSRHLRFVFGNLPSDDGSAETV
TKLASAVAACIRGMDLSGLSACLAAIVCSSEHPPLRPLGYAAGDGATVIIKSVLDRATEL
LTELPAAPDYSAPNRALWQASFNAFFGLLTKYCVSKFDSMVHNMHKHPAAATAIRKELPV
ELLRASLPHTDEQQRRLLLEFAQRTVPVAGHSSDG
NT seq 2448 nt   +upstreamnt  +downstreamnt
atgctgccaaccggggaacctacctctggatccgtgcccttgcgccagggccactttctc
ctggagccggggcctccgccggcggcggtacctgctgccaacgcgaacacctctaataca
ggtgacactagatttgatgcatcacagtatgctttttttggcaacaatgtgctggaggac
attgaactaggtggattcgaagatgataacgacagtaatgctgctttcactggactcgat
gatttagagcgcccactttcttctcaagagattgcactagaggctgaagatagttcattc
tcagatcttgcagatacattctcaaagctaagaagagatgttaacctaccaaagcatatt
ggggtaaataaccttgggacttctttttcaagagaaagttctgctgctgctgactgggct
ccagaatttgaatccccactctggcctgatcagtacgtgcaaggtgctaagcaaggacta
aatggcaatggctggtggcctccacagcgccgttcttctctccttgctgattccagattg
cacagaacatcctcatcccctcagcaacaggaacaacacaatcataatgaacctgttctt
ggaccaaggccatctcctttgcaccgtacatcctcatacccacaaaaggagcctcagtac
aatcctgctgaagtcattcctgctccaaatgcaccatacatgtcaaaccatccacctggt
ggtccacccaattcagtgcctcgacaaccacatcagatgaacatgccatctttcaatgaa
tttcagatgcatatgtctgcacaaagtgatgccccattctcccagtttcctcgtggaggg
acacctccagagtcattgtttggtggaaaccggggccatatgatttcaacaggcttctca
actaacagcagtggacaacaaggtcatctgctgaataatatgccaaatttgctgccaaac
catctacaacgtccgaatacattcatgccccatcaaatgctaacaacacgccaacagaat
ggtatgctcccaattcagcaatcttcacagcagtcatcaagaacacaggcacacatgttt
ggcccccagcatccaccacaaatgatgaataggtttgataattttgggatgcctgagttc
agtgatccaagaacaagatcattaatgcaccatggaaggcaaagccaccattttcctctc
caaggctctgagtttggtattatgaagatgggtaatgggaggtcaaggtttagatccaag
tatatgtccactgaagaacttgaaaacattttaagaatacagcatgccgccactcacata
aatgatccatacatcgatgattattaccatcaagcttgtttggccagcagatatgtggat
ggaaggtcgaagcatcgcttctacccaaccttgattcgggatccatcatcatgtgcacgg
agcaaggatgagccacatgcataccttaaggtcgatgccctagggagactgccattttct
tccatccggaggccacgtccacttcttgatgttgaaccagcttctgcaaccgacgataac
tctcttatttcaaagcctcttgatcaggaacctctgctagctgctaggatcacgattgag
gatggactcaacctactacttgatatagatgatattgatcgcttgcttcaatttagccag
cagcaagatggtggtttacaacttaaaaacagaaggcaatctctccttggtcagctggca
gaatcactgcagttggttgatccactaggtccaaataaaaacacacatttgtctgcaaat
gatgatttggtattttttcgcattgtttctctacccaagggccagaaactactttcacgc
tatatcaacctcatggtacctggtagcgatcttgcaaggatagtttgcatggcagtatcc
cggcatctgaggtttgtgtttggaaatttgccatctgatgatggttcagctgagacagta
actaaactagctagtgctgtagctgcatgcattcgtgggatggacttaagtgggctcagc
gcttgtcttgcagcaattgtgtgctcgtctgagcatccacctcttcgaccccttggatat
gctgctggtgatggtgccactgtcatcataaagtctgtcctggatagagcaacagagctt
ctcactgagctgcctgctgcaccagactatagcgctccaaaccgagccctatggcaagca
tcgtttaatgctttctttgggctgcttactaagtattgcgtgagtaaatttgacagcatg
gttcacaatatgcacaagcaccctgctgctgcaacagcgatacgcaaggaacttccagtt
gagcttctgcgtgccagtcttcctcacacagatgagcaacagcgcagactattgcttgag
ttcgcccagcggactgtgcctgtcgctggccatagttctgacgggtga

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