Miscanthus floridulus: 136461570
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Entry
136461570 CDS
T10264
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20-like isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
mflo Miscanthus floridulus
Pathway
mflo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
136461570
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mflo03041
]
136461570
03009 Ribosome biogenesis [BR:
mflo03009
]
136461570
Enzymes [BR:
mflo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
136461570
Spliceosome [BR:
mflo03041
]
Complex A
U1 snRNP components
U1 related factors
136461570
Complex B
136461570
Ribosome biogenesis [BR:
mflo03009
]
Eukaryotic type
Pre-60S particles
Helicases
136461570
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
136461570
NCBI-ProteinID:
XP_066316952
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All DBs
Position
6:6315611..6323616
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AA seq
494 aa
AA seq
DB search
MSRYDGRAADAGSYRDRRSEGAFGGGSRAFAAPSKGDASAAASELDGLPRFEKNFYVESP
AVAGMTEEEVEAYRRRREITVEGRDVPKPVLEFRDVGFPEYVLQEITKAGFVEPTPIQSQ
GWPMALRGRDLIGIAETGSGKTLAYLLPAIVHVNAQPILAPGDGPIVLVLAPTRELAVQI
QQEATKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMIESHHTNLRRVT
YLVLDEADRMLDMGFEPQIKKIVSQIRPDRQTLYWSATWPKEVEQLARNFLFDPCKVTIG
SEDLKANHAIVQHVEILSESQKYNKLVNLLEDIMDGSRILIFMDTKKGCDQITRQLRMDG
WPALSIHGDKSQAERDWVLSEFKSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDY
VHRIGRTGRAGAKGTAYSFFTAANARFAKELISILEEAGQKVSSELAAMGRGAPPPSSGY
RDRYRGYGGGRSWS
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
atgagccgctacgacggccgcgctgcggacgcgggctcctaccgtgaccgccgcagcgag
ggggcgttcggaggcgggtcgagggcgttcgcggcgccgagcaaaggggacgcttccgcg
gcggcctcggagctggatgggctgccgcgcttcgagaagaacttctacgtcgagtcaccc
gcggtggccggcatgacggaggaggaggtggaggcgtaccgccgccgccgggagatcacc
gtcgagggccgcgacgtgcccaagccggtgcttgagttccgtgatgtcggcttcccagaa
tatgtgttgcaagaaattacaaaagcaggttttgtggaacctactcctatccaatcgcaa
ggttggccaatggcactgaggggtcgtgaccttattggcattgcagagacaggatcaggg
aaaactcttgcttaccttttacctgccattgttcatgtgaatgctcagcctattcttgcc
cctggcgatggtccaatcgtcttggtgttagctcctacacgtgaacttgctgttcagata
cagcaagaagcaaccaagtttggtgcatcatcaaagataaaaagtacttgcatatatggt
ggtgtgccaaaaggtccacaagttcgtgatcttcaaaaaggtgttgaaattgttatagcc
acaccaggacgactaattgatatgatagaatcacatcatacaaacttgcgaagggtcaca
tatcttgttttagatgaagcagaccggatgctagatatgggatttgaacctcagattaag
aaaattgtttctcagattcgtccagatcgtcaaacactttactggagcgctacatggcca
aaggaagttgagcagttagcaaggaatttcctttttgacccatgcaaggtcacaattggt
tctgaagacttgaaggctaatcatgccattgttcagcatgtagagatactatccgaaagt
cagaagtataacaagctggttaatctactggaggatataatggatggtagccgaatttta
atatttatggacaccaagaagggatgtgatcagattactagacagcttcgaatggatggt
tggcctgctttgtctatccatggtgacaagagccaagcagaacgggattgggtcctttct
gaatttaagtcagggaaaagtcctattatgacagccactgatgttgctgctcgaggctta
gatgtcaaggatgtgaagtatgtcattaactatgactttccggggtcgcttgaggattat
gttcatcgtattggtcggactggcagagcaggtgcaaaaggaacagcttactcctttttc
actgcagctaatgccagatttgccaaggaacttattagtattctggaagaagctggacaa
aaggtcagctctgagttagctgctatgggtcgtggtgcacctcccccttcttcaggttac
cgtgatagatatagggggtatgggggtggccggtcgtggagttga
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