Miscanthus floridulus: 136461680
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Entry
136461680 CDS
T10264
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 14-like isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
mflo Miscanthus floridulus
Pathway
mflo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
136461680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mflo03041
]
136461680
03009 Ribosome biogenesis [BR:
mflo03009
]
136461680
Enzymes [BR:
mflo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
136461680
Spliceosome [BR:
mflo03041
]
Complex A
U1 snRNP components
U1 related factors
136461680
Complex B
136461680
Ribosome biogenesis [BR:
mflo03009
]
Eukaryotic type
Pre-60S particles
Helicases
136461680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
SWI2_SNF2
Motif
Other DBs
NCBI-GeneID:
136461680
NCBI-ProteinID:
XP_066317067
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All DBs
Position
6:12713791..12718843
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AA seq
673 aa
AA seq
DB search
MASSASAPASKGPRYAPPDPTLPKPWRGLIDGNTGYLYFWNPETKVTQYERPVAAVPSSP
SQPPGYSRPDERPRSSAPSEQRSEAAVSRPQYVPPSDNRARNDHSEPRSASGVNLSQSAP
STNQVSQAANGSQISTEAYRAKHEITIVGNEAPAPFMTFQSTGFPSEILREVLQAGFSAP
TPIQAQSWPIAIKGRDIVAVAKTGSGKTLGYLLPGFILLKRLQHNSREGPTVLVLSPTRE
LATQIQDEAVKFGRSSRISSTCLYGGAPKGPQLRELERGADVVVATPGRLNDILEMNRVS
LRQVSYLVLDEADRMLDMGFEPQIRKIVKQIPPRRQTLMYTATWPKEVRRIASDLLNNPV
QVNIGNTDQLVANKSITQHVEVIPHMEKSRRLDQILRSQDPGSKIIIFCSTKRMCDQLAR
NLSRQYGASAIHGDKSQSERDSVLNDFRSGRCPVLVATDVAARGLDIKDIRIVVNYDFPT
GVEDYVHRIGRTGRAGATGSAYTFFGDQDSKYASDLVKILEGANQSVPPQLKEMALRGGY
GGRSRRWASSDDSYGGQGYGAKRSTDNFNNSSFGDQAGGGSSFHSSFHNSSSGNQFGDIT
SFPGSYDNSSRNNQTGDNASFPPSSSNNQSGDGLSFHERFYGSRGRDQSKTSNDGFRARS
RSPPGKPVGVSNW
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcgtcggcgtccgcgccggcgtccaagggcccgcgctacgcgccgccggatccg
acgctcccaaaaccgtggaggggtctcatcgacggcaacacggggtacctgtacttctgg
aacccggagaccaaggttacgcagtacgagcgccccgtcgcggccgtgccgtcctccccg
tcgcagccgcctggctactccagacccgatgagaggccgagaagcagcgcaccttccgag
cagcggtcggaagccgcggtgagtcgcccgcagtatgtgcctccctcggataacagggca
aggaatgatcactcggagccacgctctgcatcgggagtgaacctttcacaaagtgctccg
tccactaatcaagtttctcaggctgccaatggaagccaaatttctacagaagcatatcgt
gctaagcatgagattaccattgtcggcaatgaggcacctgcgccattcatgacatttcag
tccacaggcttcccatcagagattctaagggaggttctgcaagcaggattctcggcacca
actcctatccaagctcagtcatggccaattgctataaagggccgtgatatagtagctgtg
gcgaagacaggttcaggaaaaacattgggctatctcctcccagggtttattcttctgaag
cgtctgcagcataattcaagggaaggtccaacggtattagttttgtctccaaccagggaa
ttggcaacacaaattcaagatgaagcagtcaagttcggcagatcttcaagaatatcttct
acctgcttatatggaggtgctccaaaaggccctcagctaagagagttggagcgtggtgcc
gacgttgttgtcgcaactcctgggagattgaacgacattttggaaatgaatagagtgagc
ctgcgccaagtatcttatcttgtccttgatgaagctgaccgaatgcttgatatgggattt
gagccacaaataaggaaaattgtgaaacaaataccacctagacggcaaactcttatgtac
actgccacatggccaaaagaggttagaagaatagcgtcggatttactgaataatccagtt
caagttaacattggaaacactgatcagctggttgcaaataagtcaattactcagcatgtg
gaagtcatcccacatatggagaaatcaagacgacttgatcagatcttgcgttcacaagat
cctggatcaaaaatcataatattttgctccactaagaggatgtgtgatcagttggctaga
aacctatcacggcagtatggtgcttctgctattcatggtgataaatcacagtctgagagg
gattctgtgttgaatgactttcgaagtggcaggtgtccagtacttgtagccaccgatgtc
gccgctcgaggcttggacataaaggacatcaggatcgtggttaactatgatttcccaact
ggtgtggaggactatgtccatagaattgggaggacaggtagggctggtgcgacaggatct
gcctacacattcttcggtgaccaggattcgaagtacgcttcggaccttgtcaagattttg
gagggtgcaaaccaatctgtgccaccacagttaaaagaaatggctcttcgtggaggatat
ggtggaagatcacgtcggtgggcatcttctgatgactcttatggtggtcagggatatggt
gctaaaagatcaactgataacttcaataacagcagcttcggcgaccaggctgggggtggt
tcaagctttcactcgagcttccataacagctccagtggcaatcagtttggtgatattacg
agctttcctggcagctatgataacagcagccgcaacaatcagacgggtgacaatgcaagc
tttccacccagctccagcaacaatcagtctggggatggtctcagttttcatgaaaggttc
tatggatcacgtggaagggatcagagcaaaacaagcaatgatggattccgtgctaggagc
aggagtcctcctggcaagcccgtgggagtttctaattggtga
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