Miscanthus floridulus: 136461889
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Entry
136461889 CDS
T10264
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
mflo Miscanthus floridulus
Pathway
mflo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
136461889
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mflo03019
]
136461889
03012 Translation factors [BR:
mflo03012
]
136461889
Enzymes [BR:
mflo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
136461889
Messenger RNA biogenesis [BR:
mflo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
136461889
Translation factors [BR:
mflo03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
136461889
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
T2SSE
AAA_19
nSTAND3
ATPase
AAA_16
PhoH
Myosin_head
Motif
Other DBs
NCBI-GeneID:
136461889
NCBI-ProteinID:
XP_066317347
LinkDB
All DBs
Position
6:complement(25376776..25393559)
Genome browser
AA seq
1241 aa
AA seq
DB search
MLLTSVLRGRVRLLRWPRPLTMPSPLFLSRNPNPSPGTTNAHLSSPPASAAMGTTGVYVP
PMRRLRSVIASTNGSLAPPPSAAAQAQQAARSPEWLVDGRLLSPPSPPQPRRRDIPPLPR
PPQPEHFRQQSAGYARYAYDDFSEDDSDKDIDRTSVSSKGASTLDNVDEWKWKLHMLLRN
DDEQEIISRERKDRRDFEQLAQLADRMRLHSRQYSKVVVFSKVPLPNYRSDLDDKRPQRE
VSIPAGLQREVDALLADYVARKRTNIGNFPSSAFSRSSSTDSFATDEGFFDQQDNQTSTS
AVMDRIQRRKSLQLRNQQAAWQESNDGQSMMEFRRSLPAYKEKQTLLEAISQNQVIVVSG
ETGCGKTTQLPQYILESEIDAARGATCSIICTQPRRISAIAVSERVAAERDEKIGESVGY
KVRLEGMRGRDTRLLFCTTGVLLRRLLVDRNLKGVTHVIVDEIHERGMNEDFLLIVLKDL
LPRRPELRLILMSATLNAELFSSYFGGAPMIHIPGFTYPVRSHFLEDILEITGHRLTPYN
QIDDYGQEKSWKMQKQALRKRKSQIASVVEDAVEAADLRDYSSRTRDSLSCWNPDSIGFN
LIENVLCHICQKERSGAILVFMTGWDDINALKDQLQANPLLGDPSKVLLLACHGSMASSE
QKLIFDKPEPGVRKIVLATNLAETSITINDVVFVVDCGKAKETSYDALNNTPCLLPTWIS
KASARQRRGRAGRVQPGECYQLYPRSVYDAFADYQLPELLRTPLQSLCLQIKSLRLGSIS
EFLSRALQSPESLSVQNAIEYLKVIGAFDQNEELTVLGKHLSMLPVEPKLGKMLIFGAIF
NCLDPILTIVSGLSVRDPFLTPFDKKDLAESAKLQFSCRDYSDHLALVRAYEGWREAERD
RAGYDYCWKKFLSVQTLKAIDSLRRQFLFLLKDTGLVDENMTVCNKWSRDENLVRAVICA
GLYPGVSSVVNKEKSISLKTMEDGQVMLYSSSVNGKEAKIPFPWLVFNEKVKVNSVFLRD
STAISDSILLLFGGCIKQGGLDGHLKMLGGYIEFFMNRDLASTYLSLKNELENLIHCKLQ
NPRMDIQTSEELLSAIRLLVTEDPCSGRFVYGRQEPRSKKAKTMLLPSSMSGGGGNGGDN
AKNQLQTFLTRAGHNNPTYKTKQIKSYLFRSTVEFHGMQFVGQPCANKKLAEKDAASEAL
NWLTGDGGGAITDSRGAQGADPMSLPMRPPHRRRHSHRRRS
NT seq
3726 nt
NT seq
+upstream
nt +downstream
nt
atgctcctgacctccgtcctccggggtcgcgtccgcctcctccgctggccccgcccgctg
accatgccctcccctctcttcctctccagaaaccctaatcctagccccggcaccactaac
gcccacctctcgtcgccccccgcgtcggccgcaatgggcaccaccggagtctacgtgccg
ccgatgcggcggctccgctccgttatcgcgtccaccaacgggagcctcgcgccaccaccg
tccgccgcggcgcaggcacaacaggcggcgcggtcgccggagtggctggtggacgggcgt
ttgctcagccccccctcgccgcctcagccgcggcggcgcgatatacctcccttgccgcgg
ccaccccagccagagcatttccggcagcagagcgctgggtatgcccgctatgcctacgat
gatttctctgaggatgactcagataaggacattgaccgcacgtcagtttcgagcaagggt
gcatccactttagataatgttgatgagtggaaatggaaactgcacatgctacttcgtaat
gatgatgaacaagagattatctcaagggaaagaaaggataggcgagattttgaacaactt
gcccaactggctgacagaatgcgtttgcacagccgtcagtattctaaagttgttgtgttc
agtaaggttccgttgcctaattatagatcagatcttgatgacaaaagaccccaaagagag
gtatctatacctgctggtttgcaaagagaagttgatgctctgcttgcagattatgttgca
cggaagagaacaaacatcgggaacttccctagttcagccttctcacggtcaagcagcaca
gacagttttgcaactgatgaaggcttctttgatcagcaagataatcaaacttccactagt
gctgtgatggacagaatccaacgaaggaaaagcctgcagttgcggaatcagcaggctgct
tggcaggaatcaaatgatggtcaaagcatgatggagtttcgtcgcagtcttcctgcttat
aaagagaagcaaactttattggaagctatatcacagaatcaggtcattgtagtttcaggt
gagactggctgcggtaagacgacacaactaccgcagtacattctagaatctgaaatcgat
gctgctcgtggtgctacgtgcagtattatttgcactcaaccgagacgaatatcagcaatt
gctgtgtccgaaagagttgctgctgaaagagacgagaaaattggtgaatcggttggctac
aaagttcgactggaaggcatgagaggaagggatacacgccttcttttctgcaccactgga
gtcctgttgcggagattgttggtggacagaaatttgaaaggtgttacccatgttatcgtt
gatgaaatccatgagaggggcatgaatgaagattttcttcttattgtcttaaaggatctt
cttccacgtcgtcctgagctgagacttatattgatgagtgcaacccttaacgctgagcta
ttctcttcatactttggtggagcacccatgatacacatacctggttttacctatcctgtt
cggagtcattttctggaagatattcttgaaattactgggcaccggttaactccttacaat
caaattgatgactatggccaagaaaaaagttggaagatgcaaaagcaagctctacgaaag
cggaagagccaaatcgcttctgttgtggaagatgcagttgaagctgctgatttgagagac
tatagttcgcgaactcgcgattctctatcctgttggaatcctgattcaattggttttaat
ttaatagaaaatgtcttatgccatatttgtcaaaaggaacgatcaggtgcaatacttgta
tttatgactgggtgggatgacattaatgcattaaaagatcagctgcaagcaaatccactg
cttggagatccaagcaaagttttgttgctcgcttgtcatggttcgatggccagttcagag
cagaaattaatatttgataagcctgagcctggagtaaggaaaatagttcttgccacgaat
ttggctgaaactagtattactatcaacgatgtagtttttgttgttgactgtggcaaggca
aaagagacgtcttacgatgcactgaataatactccctgtttgcttccaacctggatctcc
aaggcttctgccagacaaagacgaggacgagctggtcgagtccaaccaggggagtgctac
caactttatccacgatctgtatatgatgcatttgctgactaccagttaccagaacttctg
agaacccctctccaatccctctgtttgcaaataaaaagcttgaggctaggaagtatatca
gaatttttatccagagctttacaatcacctgaatctctatcagtacaaaatgccattgaa
tatctcaaagtcattggagcttttgatcagaatgaagagttgacggttcttggaaagcac
ttgtctatgcttccagttgaacctaagttaggaaagatgcttatttttggggctattttt
aattgtctggaccccatattaaccatagtttctggacttagtgttagagatccttttttg
acccccttcgataagaaagatcttgcagagtcagctaaattgcagttttcatgtcgggac
tacagtgatcatcttgcacttgttcgtgcatatgaaggatggagggaggctgaaagagac
cgtgctggttatgactactgctggaaaaaatttctttcggtgcaaacattgaaagcaata
gattctcttcggcgtcagtttctctttcttctgaaggatactggtttggttgatgaaaac
atgactgtgtgcaataaatggagccgtgatgaaaatctagttcgggcggtaatttgtgca
ggactatatccaggtgtttcctctgttgtgaacaaggagaaatccatctccctcaagaca
atggaggatggacaggttatgctttattcgagttcggttaatggtaaagaagccaagatt
ccattcccctggctagttttcaatgagaaggtgaaggtgaattctgttttcctccgggat
tcaactgctatatctgattctatattgttgttattcggaggctgcataaaacaagggggc
ttggatggacacttaaaaatgcttggaggttatattgagttcttcatgaatcgtgatctt
gcttcaacttatttgagtctgaagaatgaacttgagaatttaatccattgcaagctccaa
aacccaaggatggatatccaaacgagtgaagagctgctatcagccatccgtttgctggtg
actgaggacccatgcagtgggcggttcgtctacggccgacaggagccaagatcaaagaaa
gcaaagacgatgcttttgccatcctccatgagtggcggtggtggtaacggaggggataat
gccaagaaccagctccagactttcctgacccgggccgggcacaacaaccctacctacaag
acgaagcagatcaagagctatctcttcaggtcaacggttgagttccatggcatgcagttc
gtggggcagccgtgtgcaaacaagaaacttgcggagaaggatgctgcgagcgaggcgctg
aactggctcacaggagatggtggtggagcgatcactgactctaggggggcccagggcgca
gaccccatgtccttgccgatgcgaccaccacacaggcgacggcatagccatcgtcggagg
agctga
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integrated database retrieval system
