Miscanthus floridulus: 136461934
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Entry
136461934 CDS
T10264
Name
(RefSeq) DNA excision repair protein CSB-like isoform X1
KO
K10841
DNA excision repair protein ERCC-6
Organism
mflo Miscanthus floridulus
Pathway
mflo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
136461934
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
mflo03036
]
136461934
03400 DNA repair and recombination proteins [BR:
mflo03400
]
136461934
Chromosome and associated proteins [BR:
mflo03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
136461934
DNA repair and recombination proteins [BR:
mflo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Other TCR factor
136461934
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
WHD_Rad26_CSB
ResIII
HDA2-3
WHD_SOWAH
Motif
Other DBs
NCBI-GeneID:
136461934
NCBI-ProteinID:
XP_066317420
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All DBs
Position
6:complement(28068688..28074191)
Genome browser
AA seq
1252 aa
AA seq
DB search
MDEEDDDQRLLHSLGVTSANIEDIEKKILSQAKPSAFSLLLLARSIPLSHLTTTALSNPP
PTICSGCRPVCVVQVQTEPKRDDEQGAAVDDPSRGNVAPESDAQAKLHQKLRSVQLEINT
VASTIKRAKNAAGKKVDSSDSADGQDKKKQKQADRTAQDEPHGGALQQALATERLKSLKK
AKAQIQKEISQSDPNPSGSDNRKDKMLAMLVEDEPRHKKKSLLPARGPKKMSAPRLKTMS
YNDDEDFDAVLDGASAGFMETEREELIRKGLLTPFHKLKGFEKRVELPGPSHRQNDPSEQ
AEETIEASRIARVAQSMQRIAQSRPTTKLLDPESLPRLDAPTAPFQRLGRPLKRPVSPSS
EEQERKRQRNKTKRPLPDKKWRKANSRKESLLETDDEDVGDFVASVSEEDDQAAEGFDGL
TPVILEGGLRIPGTIYEQLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTVQVLSFLGS
LHNSSMYKPSIVICPVTLLQQWQREASRWYPKFKVEILHDSANGSSKKSKAYSDSDSEGS
WDSDQEEVRRAKPAKKWDDLISRVVNSGSGLLLTTYEQLRILGEKLLDIEWGYAVLDEGH
RIRNPNAEITLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFETEFSV
PITVGGYANATPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTPE
QRSTYRAFLASSEVEQIFDGNRNSLYGIDVLRKICNHPDLLEREHAAQNPDYGNTERSGK
MKVVEQVLKVWKDQGHRVLLFTQTQQMLDILENFLTACGYQYRRMDGLTPAKQRMALMDE
FNNTDEIFVFILTTKVGGLGTNLTGANRIIIYDPDWNPSTDMQARERAWRIGQTRDVTVY
RLITRGTIEEKVYHRQIYKHFLTNKVLKNPQQKRFFKARDMKDLFILQDDEGNGSTETSN
IFSQLSEDVNIGVPNDGQQDQAHIASALPSTSEAEPSNGGEGRVDVNSDQADEESNILKS
LFDAQGIHSAINHDAIMNANDDQKVRLEAEASQVAQRAAEALRQSRMLRSRDSFAVPTWT
GRSGAAGAPSSVRRKFGSTVNSQLTRSSQPSETSSSRSQSLPVGALNGKALSSAELLAKI
RGTREGAASDALEHQLNAGSASNHVSSPSGNGGRISNSSNRSMIVQPEVLIRQLCTFIQH
SGGFASSTSITEHFKSRIQSKDMLLFKNLLKEIATLQRGADGSMWVLKPDYT
NT seq
3759 nt
NT seq
+upstream
nt +downstream
nt
atggacgaagaggacgacgaccagcgcctgctgcacagcctcggcgtcacgtccgccaac
atcgaggacatcgagaagaaaatcctctcgcaggcaaaacccagtgccttttccctcctc
ctcctcgcgcgttccattcctctctcgcatctcaccaccacagctttgagtaatccccca
cccacaatctgctcaggttgccgtcccgtatgtgttgtgcaggtccaaactgaacccaag
cgcgacgatgaacaaggagcagccgtcgatgaccccagcaggggcaatgttgcgcctgag
tctgatgcgcaggccaagctgcaccagaagctgcgctcggtgcaactcgagatcaacacc
gtagcttccaccattaaaagagctaagaacgcagctggtaagaaggtcgacagctcggac
agcgctgatggacaagataaaaagaagcagaagcaagccgatcgcactgctcaggacgaa
cctcatggaggagccctccagcaggcgctcgccaccgagcgccttaaaagcctcaagaaa
gctaaagctcagattcagaaagagatatcgcagtcggaccccaacccgtctggctcagac
aaccggaaagataaaatgctggccatgctggttgaagacgagccgaggcataagaagaag
tcgctattgccggctcgaggacctaagaagatgtcggctcctagactgaaaaccatgagt
tataatgacgatgaagactttgacgcagtgcttgatggggcttctgcaggatttatggaa
acagaaagggaagaactaatcaggaagggcttactgacaccatttcacaagttgaagggc
tttgagaagcgtgtcgagctgcctggaccttctcataggcaaaatgatccctccgaacaa
gctgaagaaacaattgaagcttccaggattgctagagttgctcagtcaatgcagcggatt
gcacaaagtcgcccaacgaccaaattgcttgatccagaatctttacctaggctggacgca
cctactgctccatttcaaaggcttggaaggcctctaaagcgtcctgtatctccaagttca
gaagaacaggaaaggaagagacaaaggaataagaccaagaggcccttgcctgacaagaaa
tggaggaaagccaattcaaggaaggaatcactattggaaactgacgatgaggatgttggg
gacttcgtggcatcagtttctgaggaagatgatcaagcagcagaaggttttgatgggtta
actcctgttatccttgaaggtggtttgagaattcctggcacaatttatgaacagctattt
gattaccaaaaagtgggagtgcagtggttgtgggagttacactgtcaaagggctggtgga
attattggagatgaaatgggcctgggaaaaactgtgcaagtcttatcatttcttggttct
ttgcataacagcagcatgtacaagcccagcatcgttatttgtcctgtaacacttctgcaa
cagtggcaaagggaggccagtaggtggtatccaaagttcaaggtggagatcttacatgat
tctgcaaatggttcaagtaaaaagagcaaggcatatagtgattctgacagcgaaggttct
tgggatagtgatcaggaagaggttagacgtgcaaagcctgcaaagaagtgggatgacttg
atttcacgggttgtaaattcaggatcaggtttgcttttaaccacatatgagcagctaaga
atcttaggggagaagttgctggatatagaatggggatatgctgtgttggatgagggtcat
cgtataaggaaccccaatgctgagataacgctggtgtgcaagcaactacagactgtgcac
aggataatcatgacaggtgcacctattcagaataaactttctgagctctggtctcttttc
gatttcgtgttccctggaaaactaggtgtgctgcctgtatttgagactgaattttctgtg
ccaattactgttggtggttatgctaatgcgacaccattgcaagtgtcaacagcatacaga
tgtgctgttgttctgcgtgatcttatcatgccataccttcttagacggatgaaagctgat
gtcaatgcacagctccccaagaaaacagagcatgtccttttctgtagtttaactccagag
cagcgttctacttatcgtgcttttcttgctagttcagaggtggaacaaatatttgatggc
aatagaaattcactgtatggtatagatgtcctaaggaagatatgcaatcatcctgatcta
cttgagagagaacatgctgctcagaatcctgactatgggaatactgaaagaagtggaaag
atgaaagtagtagagcaagttctcaaagtctggaaggaccaaggccaccgagttcttctg
ttcactcaaactcaacaaatgcttgacattttagagaacttcttgacggcctgtggctac
caataccgaagaatggatggactaacacctgcaaaacaaaggatggcactaatggatgag
ttcaataacacagatgaaatctttgttttcattctgaccacaaaagttggtggattgggt
acaaacttgactggtgcaaacaggattattatttatgatccggactggaacccttcaaca
gacatgcaggccagagaacgtgcatggcgaattgggcaaactagagatgtaacggtttac
agactgatcacacgtgggacgatagaggagaaagtctatcaccgacagatatacaagcat
ttccttactaacaaagtactgaaaaaccctcagcagaagagattctttaaagccagagac
atgaaggatttattcatattacaagacgacgaagggaacggttcaactgaaacatcaaat
attttcagccagttgtctgaagatgtgaatattggggttccaaatgatggtcaacaagat
caggctcatattgcttcggctttgccaagcaccagtgaagctgaaccatctaatggaggg
gaagggagagtggacgttaactctgaccaagcagatgaagaatcgaacattttgaagagt
ctttttgatgctcaaggcattcatagtgctatcaatcatgatgccataatgaacgctaat
gatgaccagaaagtgcgcttagaagcagaagcttcacaggtggcacaaagggcagctgaa
gctttacgtcaatcacggatgctcagaagccgtgacagttttgctgttcccacatggacc
ggaagatctggtgctgctggggcaccctcctctgttcgcaggaagtttgggtccacagtt
aacagccagttgacccgttcctcacagccatcagaaacttccagcagcaggagtcaaagt
cttccagtgggtgctctgaatggcaaggcactgtcatctgctgaacttctggctaagatt
cgtggaacccgagagggagctgcttcagatgccttggagcatcagctcaacgcaggatca
gcttccaatcatgtatcaagtccatctgggaacggcggccgcatatctaactcttctaac
agaagcatgatcgtgcaaccagaagtcctgatccgccagttgtgcaccttcatacagcat
agcggtgggtttgccagctccacgagcataacggaacacttcaaaagccgcattcagtcc
aaggatatgcttctcttcaagaacctgctgaaggagatagcaactttgcaaagaggcgcg
gacggttctatgtgggtgctgaaacctgattacacgtga
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