Miscanthus floridulus: 136461935
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Entry
136461935 CDS
T10264
Name
(RefSeq) DNA excision repair protein CSB-like
KO
K10841
DNA excision repair protein ERCC-6
Organism
mflo Miscanthus floridulus
Pathway
mflo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
136461935
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
mflo03036
]
136461935
03400 DNA repair and recombination proteins [BR:
mflo03400
]
136461935
Chromosome and associated proteins [BR:
mflo03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
136461935
DNA repair and recombination proteins [BR:
mflo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Other TCR factor
136461935
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
WHD_Rad26_CSB
ResIII
HDA2-3
WHD_SOWAH
Motif
Other DBs
NCBI-GeneID:
136461935
NCBI-ProteinID:
XP_066317422
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All DBs
Position
6:complement(28378591..28383921)
Genome browser
AA seq
1209 aa
AA seq
DB search
MDEEDDDQRLLHSLGVTSANIEDIEKKILSQVQTEPKRDDEPGAAVDDPSRSNVAPESDA
QAKLHQKLRSVQLEINTVASTIKRAKNAAGKKVDSSDSADGQDKKKQKQADRTAQDEPHG
GALQQALATERLKSLKKAKAQIQKEISQSDPNPSSSDNRKDKMLAMLVEDEPRRKKKSLL
PARGPKKMSAPRLKTMSYNDDEDFDAVLDGASAGFMETEREELIRKGLLTPFHKLKGFEK
RVELPGPSHRQNDPSEQAEETIEASRIARVAQSMQQIAQSRPTTKLLDPESLPRLDAPTA
PFQRLGRPLKRPVSPSSEEQERKRQRNKTKRPLPDKKWRKANSRKESLLETDDEDVGDFV
ASVSEEDDQAAEGFDGLSPVILEGGLRIPGTIYEQLFDYQKVGVQWLWELHCQRAGGIIG
DEMGLGKTVQVLSFLGSLHNSSMYKPSIVICPVTLLQQWQREASRWYPKFKVEILHDSAN
GSSKKSKAYSDSDSEGSWDSDQEEVRRAKPAKKWDDLISRVVNSGSGLLLTTYEQLRILG
EKLLHIEWGYAVLDEGHRIRNPNAEITLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFV
FPGKLGVLPVFETEFSVPITVGGYANATPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNA
QLPKKTEHVLFCSLTPEQRSTYRAFLASSEVEQIFDGNRNSLYGIDVLRKICNHPDLLER
EHAAQNPDYGNPERSGKMKVVEQVLKVWKDQGHRVLLFTQTQQMLDILENFLTACGYQYR
RMDGLTPAKQRMALMDEFNNTDEIFVFILTTKVGGLGTNLTGANRIIIYDPDWNPSTDMQ
ARERAWRIGQTRDVTVYRLITRGTIEEKVYHRQIYKHFLTNKVLKNPQQKRFFKARDMKD
LFILQDDEGNGSTETSNIFSQLSEDVNIGVPNDGQQDQAHIASALPSTSEAEPSNGGEGR
VDVNSDQADEESNILKSLFDAQGIHSAINHDAIMDANDDQKVRLEAEASQVAQRAAEALR
QSRMLRSCDSFAVPTWTGRSGAAGAPSSVRRKFGSTVNSQLTHSSQSSETSSSRSQSLSV
GALNGKALSSAELLAKIRGTREGAASDALEHQLNAGSASNHVSSPSGNGGRISNSSNRSM
IVQPEVLIRQLCTFIQHSGGFASSTSITEHFKSRIQSKDMLLFKNLLKEIATLQRGAGGS
MWVLKPDYT
NT seq
3630 nt
NT seq
+upstream
nt +downstream
nt
atggacgaagaggacgacgaccagcgcctgctacacagcctcggcgtcacgtccgccaac
atcgaggacatcgagaagaaaatcctctcgcaggtccaaactgaacccaagcgcgacgat
gagccaggagcagccgtcgatgaccccagcaggagcaatgttgcgcctgagtctgatgcg
caggccaagctgcaccagaagctgcgctcggtgcaactcgagatcaacaccgtagcttcc
accattaaaagagctaagaacgcagctggtaagaaggtcgacagctcggacagcgctgat
ggacaagataaaaagaagcagaagcaagccgatcgcactgctcaggacgaacctcatgga
ggagccctccagcaggcgctcgccaccgagcgccttaaaagcctcaagaaagctaaagct
cagattcagaaagagatatcgcagtcggaccccaacccgtctagctcagacaaccggaaa
gataaaatgctggccatgctggttgaagacgagccgaggcgtaagaagaagtcgctactg
ccggctcgaggacctaagaagatgtcggctcctagactgaaaaccatgagttataatgac
gatgaagactttgacgcagtgcttgatggggcttctgcaggatttatggaaacagaaagg
gaagaactaatcaggaagggcttactgacaccatttcacaagttgaagggctttgagaag
cgtgtcgagctgcctggaccttctcataggcaaaatgatccctccgaacaagctgaagaa
acaattgaagcttccaggattgctagagtcgctcagtcaatgcagcagattgcacaaagt
cgcccaacgaccaaattgcttgatccagaatctttacctaggctggacgcacctactgct
ccatttcaaaggcttggaagacctctaaagcgtcctgtatctcctagttcagaagaacag
gaaaggaagagacaaaggaataagaccaagaggcccttgcctgacaagaaatggaggaaa
gccaattcaaggaaggaatcactattggaaactgacgatgaggatgttggggacttcgtg
gcatcagtttctgaggaagatgatcaagcagcagaaggttttgatgggttatctcctgtt
atccttgaaggtggtttgagaattcctggcacaatttatgaacagctatttgattaccaa
aaagtgggagtgcagtggttgtgggagttacactgtcaaagggctggtggaattattgga
gatgaaatgggcctaggaaaaactgtgcaagtcttatcatttcttggttctttgcataac
agcagcatgtacaagcccagcatcgttatttgtcctgtaacacttctgcaacagtggcaa
agggaggccagtaggtggtatccaaagttcaaggtggagatcttacatgattctgcaaat
ggttcaagtaaaaagagcaaggcatatagtgattctgacagcgaaggttcttgggatagt
gatcaggaagaggttagacgtgcaaagcctgcaaagaagtgggatgacttgatttcacgg
gttgtaaattcaggatcaggtttgcttttaaccacatatgagcagctaagaatcttaggg
gagaagttgcttcatatagaatggggatatgctgtattggatgagggtcatcgtataagg
aaccccaatgctgagataacgctggtgtgcaagcaactgcagactgtgcacaggataatc
atgacaggtgcacctattcagaataaactttctgagctctggtctcttttcgatttcgtg
ttccctggaaaactaggtgtgctgcctgtatttgagactgaattttctgtgccaattact
gttggtggttatgctaatgcgacaccattgcaagtgtcaacagcatacagatgcgctgtt
gttctgcgtgatcttatcatgccataccttcttagacggatgaaagctgatgtcaatgca
cagctccccaagaaaacagagcatgtccttttctgtagtttaactccagagcagcgttct
acttatcgtgcttttcttgctagttcagaggtggaacagatatttgatggcaatagaaat
tcactgtatggtatagatgtcctaaggaagatatgcaatcatcctgatctacttgagaga
gaacatgctgctcagaatcctgactatgggaatcctgaaagaagtggaaagatgaaagta
gtagagcaagttctcaaagtctggaaggaccaaggccaccgagttcttctgttcactcaa
actcaacaaatgcttgacattttagagaacttcttgacggcctgtggctaccaataccga
agaatggatggactaacacctgcaaaacaaaggatggcactaatggatgagttcaataac
acagatgaaatctttgttttcattctgaccacaaaagttggtggattgggtacaaacttg
actggtgcaaacaggattattatttatgatccggactggaacccttcaacagacatgcag
gccagagaacgtgcatggcgaattgggcaaactagagatgtaacggtttacagactgatc
acacgtgggacgatagaggagaaagtctatcaccgacagatatacaagcatttccttact
aacaaagtactgaaaaaccctcagcagaagagattctttaaagccagagacatgaaggat
ttattcatattacaagacgacgaagggaacggttcaactgaaacatcaaatattttcagc
cagttgtctgaagatgtgaatattggggttccaaatgatggtcaacaagatcaggctcat
attgcttcggctttgccaagcaccagtgaagctgaaccatctaatggaggggaagggaga
gtggacgttaactctgaccaagcagatgaagaatcgaacattttgaagagtctttttgat
gctcaaggcattcatagtgctatcaatcatgatgccataatggacgctaatgatgaccag
aaagtgcgcttggaagcagaagcttcacaggtggcacaaagggcagctgaagctttacgt
caatcacggatgctcagaagctgtgacagttttgctgttcccacatggaccggaagatct
ggtgctgctggggcaccctcctctgttcgcaggaagtttgggtccacagttaacagccag
ttgacccattcctcacagtcatcagaaacttccagcagcaggagtcaaagtctttcagtg
ggtgctctgaatggcaaggcactgtcatctgctgaacttctggctaagattcgtggaacc
cgagagggagctgcttcagatgccttggagcatcagctcaacgcaggatcagcttccaat
catgtatcaagtccatctgggaacggcggccgcatatctaactcttctaacagaagcatg
atcgtgcaaccagaagtcctgatccgccagttgtgcaccttcatacagcatagtggtggg
tttgccagctccacgagcataacggaacacttcaaaagccggattcagtccaaggatatg
cttctcttcaagaacctgctgaaggagatagcaactttgcaaagaggcgcgggtggttct
atgtgggtgctgaaacctgattacacgtga
DBGET
integrated database retrieval system
