Miscanthus floridulus: 136464306
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Entry
136464306 CDS
T10264
Name
(RefSeq) zinc finger CCCH domain-containing protein 40-like
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
mflo Miscanthus floridulus
Pathway
mflo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
136464306
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mflo03041
]
136464306
Spliceosome [BR:
mflo03041
]
Complex B
Other components
Prp19-related factors
136464306
Complex C
136464306
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STL11_N
RRM_1
zf-CCCH_RBM22
Torus
zf_CCCH_4
zf-CCCH_2
zf-CCCH
zf-CCCH_3
zf-CCCH_10
zf-CCCH_4
RRM_3
zf-CCCH_PARP12
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
136464306
NCBI-ProteinID:
XP_066319367
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All DBs
Position
7:112806657..112810886
Genome browser
AA seq
500 aa
AA seq
DB search
MAHRLLRDAQADGWERSDFPIICESCLGDNPYVRMLRAEYDKECKICARPFTVFRWRPGR
DARYKKTEICQTCCKLKNVCQVCLLDLEYGLPVQVRDTALAINSNDAIPRSDVNREYFAE
EHDRRARAGIDYDSSYGKARPNDTILKLQRTAPYYKRNRAHVCSFFVRGECTRGAECPYR
HEMPETGELSQQNIKDRYYGVNDPVAQKLLSKAGEMPSLTPPDDETIRTLYIGGLDSRIT
EQDLRDQFYAHGEIESIRMVLQRAIAFVTYTTREGAEKAAEELANKLVIKGVRLKLMWGK
PQAPKPEEDESGRQGQISHGGLLPRAVISQQQSGDQPQPPGMEGQQQQAAQASYYFNIPA
PPAAERTLYPSMDPQRMGAIVKSQDGEGKPGLQQAGQAQSSSSSAQGGYPAPPPYYHGQY
PPYYPPPPPYGGYMPPLRMPYPPQYPPYQPMLAQPAQAQASSSQQPPQAGAGQLPPHGPS
AQQPPHGPPAQQQPQQPIQN
NT seq
1503 nt
NT seq
+upstream
nt +downstream
nt
atggcgcatcggctgctgcgggacgcgcaggcggacgggtgggagcggtcggacttcccc
atcatctgcgagtcatgcctcggcgacaacccctacgtccggatgttaagagctgagtat
gacaaagagtgcaaaatttgtgcacgtccttttactgtctttcggtggcgtcctggtcga
gatgcaaggtacaagaagactgagatttgccagacatgttgcaagctaaagaatgtctgc
caggtctgcctgctggatcttgaatatggtctgcctgttcaggtccgggatacagcactc
gctatcaattctaatgatgcaattccaaggagtgatgtcaatcgcgaatattttgcagaa
gagcatgataggagggccagagctggcatagactatgattcttcctatgggaaggctcgt
ccaaatgataccattctgaagcttcagaggacagcaccatattacaagaggaacagagct
catgtttgtagtttctttgtgcgtggtgaatgtacaagaggagctgagtgcccttatcgt
catgagatgcctgaaactggggagttatctcagcagaacattaaagatcgctactatgga
gttaatgacccagttgcacagaaacttttgagcaaggcaggtgagatgccatccctgaca
ccgccagatgatgagactataaggaccctctacattggtggactcgatagcagaataact
gagcaggatttgagggatcaattttatgcccatggtgagattgagtccataaggatggta
cttcaacgtgcaatcgcatttgtgacatatactacaagagaaggcgcagagaaggctgca
gaggagcttgctaacaagctagtcatcaagggtgtgcgcctgaagctgatgtggggcaag
cctcaggctccaaaacctgaggaggatgagtctgggaggcagggacagatttcccatgga
ggactgctcccaagggctgtcatatctcagcagcagagcggtgaccaacctcaaccccct
gggatggagggccaacagcaacaggctgcacaagcatcgtactacttcaacattccagca
ccaccagcagcggagcggactctgtacccatccatggatccacagaggatgggtgctata
gtaaaatcacaggacggtgaaggcaaaccagggctgcagcaagccgggcaagctcagtca
tcaagcagctcagcacagggtggctatcctgcaccaccgccatactaccatggtcagtat
ccaccatactatccacctccaccaccatatggtggctacatgcctccactgcgcatgccc
tacccaccacaatatccaccttaccagccgatgctagcacaaccagcacaggcacaggct
agttcatctcagcaaccaccgcaagcaggtgcaggacagctgccgcctcatggcccttca
gctcagcagccgcctcatggccctccagctcagcagcagccgcagcagccaattcagaac
tga
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