KEGG   Miscanthus floridulus: 136464576
Entry
136464576         CDS       T10264                                 
Name
(RefSeq) replication factor C subunit 3-like isoform X1
  KO
K10756  replication factor C subunit 3/5
Organism
mflo  Miscanthus floridulus
Pathway
mflo03030  DNA replication
mflo03410  Base excision repair
mflo03420  Nucleotide excision repair
mflo03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:mflo00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    136464576
   03410 Base excision repair
    136464576
   03420 Nucleotide excision repair
    136464576
   03430 Mismatch repair
    136464576
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mflo03032]
    136464576
   03036 Chromosome and associated proteins [BR:mflo03036]
    136464576
   03400 DNA repair and recombination proteins [BR:mflo03400]
    136464576
DNA replication proteins [BR:mflo03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    136464576
  DNA Replication Termination Factors
   ELG1-RFC complex
    136464576
Chromosome and associated proteins [BR:mflo03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    136464576
DNA repair and recombination proteins [BR:mflo03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     136464576
  Check point factors
   HRAD17(Rad24)-RFC complex
    136464576
SSDB
Motif
Pfam: Rep_fac_C AAA Rad17 DNA_pol3_delta2 RCF1-5-like_lid AAA_assoc_2 AAA_16 AAA_22 DNAX_ATPase_lid AAA_11 ATPase_2 AAA_5 AAA_7 DUF815 RuvB_N AAA_14 AAA_30 bpMoxR nSTAND3 ResIII AAA_19 AAA_2 AAA_24 AAA_3 SLFN-g3_helicase MCM DUF3086 AAA_28 TIP49 TniB Mg_chelatase
Other DBs
NCBI-GeneID: 136464576
NCBI-ProteinID: XP_066319621
LinkDB
Position
7:123482211..123486787
AA seq 362 aa
MAGTTAVAPMDIDAAAPPPPPPGAAAKGKAPLSAGGRAAPWVEKYRPQSLADVAAHRDIV
DTIDRLTNENRLPHLLLYGPPGTGKTSTILAVARKLYGSQYSNMILELNASDERGINVVR
QQIQDFAGARSLSFGARPSVKLVLLDEADAMTKDAQFALRRVIEKYTRSTRFALICNHVN
KIIPALQSRCTRFRFAPLDGSHVRECLQHIIKSEGLSVDEGGLTALVRLSNGDMRKALNI
LQATHMASQHMTEEAVYLCTGNPMPKDIEQISFWLLNEPFSTSFKYISDMKMRKGLALVD
IIREVTMFVFKIQMPSDVRVKLINDLADIEYRLSFACNDKLQLGALISTFTDARTAIVAA
AS
NT seq 1089 nt   +upstreamnt  +downstreamnt
atggcgggaaccaccgccgtcgctcccatggacatcgacgccgccgcgccgcctcccccg
ccgcccggggcggcggccaagggcaaggcgccgctctccgccggcggcagggctgcgccc
tgggtagagaagtaccggccccagtccctcgccgacgtcgccgcccaccgcgacatcgtc
gacaccattgacaggcttacaaatgagaatagacttccacacttgttgctatacgggcca
cctggcactgggaaaacatcgacgattctggctgttgcgaggaagctatatgggtctcag
tatagcaacatgatcctggagctcaatgcatcagatgaacgtggtattaatgttgtcagg
cagcagatccaggatttcgctggcgcacgcagcctctcttttggagcaaggccttctgtt
aagttggtcctcttggatgaagcagatgcaatgacaaaggatgcacaatttgcattgcga
agagtcattgagaagtatacaaggagcacaaggtttgcactcatttgcaaccatgtcaac
aaaattatccctgcactacaatcaaggtgcactaggtttagatttgctccactagacggc
agtcatgttagagaatgtcttcaacatataataaaatctgaggggctcagtgtagatgag
ggtggcttgacagccctagtgcggttaagcaatggtgatatgaggaaggctttgaatata
ttgcaggcaacacacatggcatcccaacatatgacagaagaagctgtctatctttgcaca
ggaaaccccatgccaaaagatattgagcagatatcattttggctattaaatgaaccgttt
tcaaccagcttcaaatatatatctgacatgaagatgagaaaagggttggccttggttgat
atcatacgggaggttactatgtttgtgttcaaaatacaaatgccatctgacgttcgtgta
aagctaatcaatgacttggctgatattgagtacaggctaagctttgcatgcaacgataaa
ctgcagctgggcgcactgatctcaactttcacggatgctcgcacggctatcgttgctgct
gccagctaa

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