Miscanthus floridulus: 136466398
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Entry
136466398 CDS
T10264
Name
(RefSeq) spliceosome-associated protein 130 A-like
KO
K12830
splicing factor 3B subunit 3
Organism
mflo Miscanthus floridulus
Pathway
mflo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
136466398
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mflo03021
]
136466398
03041 Spliceosome [BR:
mflo03041
]
136466398
03036 Chromosome and associated proteins [BR:
mflo03036
]
136466398
Transcription machinery [BR:
mflo03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
136466398
Spliceosome [BR:
mflo03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
136466398
Complex B
136466398
Complex C
U2 SnRNP specific factors
136466398
Chromosome and associated proteins [BR:
mflo03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
136466398
TFTC complex
136466398
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Motif
Other DBs
NCBI-GeneID:
136466398
NCBI-ProteinID:
XP_066320880
LinkDB
All DBs
Position
7:complement(3302492..3308353)
Genome browser
AA seq
1231 aa
AA seq
DB search
MYLYSLTLQRATGAVCTVIGSFSGRDSKKSAASGSGSGSTQEIAVARGSTLDLLRPDPET
GRLRTLLSVDVFGAIRSLAQFRLTGANKDYLVVGSDSGRLVILEYSPDRNRLDKVHQETF
GKSGCRRIVPGQLLAVDPKGRALCIAALEKQKLVYVLNRDAAARLTISSPLEAHKSNTLT
FALAALDCGFDNPVFAAIELEYAESDRDPTGQAANQAQKLLTFYELDLGLNHVSRKVSEP
IDNGANLLVTVPGGGDGPSGVLVCCDNFVLYRNQGHPEIRAVIPRRADLPAERGVLIVAA
ATHKQKSMFFFLLQTEYGDIFKVDLDHSGDTVSELRIKYFDTIPVTSAVCVLRSGFLFAA
SEFGNHALYQFRDIGRDADVESSSATLMETEEGFQPVFFQPRALKNLMRIDEIESLMPVM
DMRVANLFDEETPQLFTACGRGPRSTLRILRPGLAISEMARSMLPAEPIAVWTVKKNIND
MFDAYIVVSFTNVTLVLSIGETIEEVSDSQFLDTTHSLAVALLGEDSLMQVHPNGIRHIR
EDGRVNEWRTPGKKTITKVGSNRLQVVIALSGGELIYFEMDMTGQLMEVEKQDMSGDVAC
LAIAPVPEGRQRSRFLAVGSYDNTIRILSLDPDDCLQPLSLQSVSSAPESLLFLEVQASI
GGEDGADYPANLFLNAGLQNGVLFRTNVDMVTGQLSDTRSRFLGLRPPKLFPCIVSHRQA
MLCLSSRPWLGYIHQGHFLLTPLSCDTLESAASFSSDQCSEGVVAVAGDALRIFTIERLG
ETFNETAIPLRYTPRKFVILPKKKYIAVIESDKGAFSAEEREAAKKECLEASGAAENGNA
NNGDPMENGDGREDGAEGNMFPDEQYGYPKAESERWVSCIRILDPRSRDTTCLLELQENE
AAVSICTVNFHDKEHGTLLAVGTAKGLQFWPRRTLAGGFIHVYKFVDEGRSLELLHKTQV
EEVPLALCQFQGRLLAGVGSVLRLYDLGKRKLLRKCENKLFPRTIVSIHTYRDRIYVGDM
QESFHYCKYRRDENQLYIFADDSVPRWLTAAQHIDFDTMAGADKFGNIYFARLPQDLSDE
IEEDPTGGKIKWEQGKLNGAPNKVDEIVQFHVGDVVTCLQKASLIPGGGECLIYGTVMGS
VGALLAFTSREDVDFFSHLEMHLRQEHPPLCGRDHMAYRSAYFPVKDVIDGDLCEQYPSL
PADMQRKIADELDRTPGEILKKLEDIRNKII
NT seq
3696 nt
NT seq
+upstream
nt +downstream
nt
atgtacctctacagcctgacgctgcagcgcgcgacgggcgcggtgtgcaccgtcatcggc
agcttcagcgggcgggactcgaagaagtcggccgcctccgggtccgggtccggctccacg
caggagatcgccgtggcccggggcagcacgctcgacctcctccgcccggacccggagacg
ggccgcctccgcacgctcctctccgtcgacgtcttcggcgccatccgctcgctcgcgcag
ttccgcctcaccggcgccaacaaggactacctcgtcgtcggctccgactcgggccgcctc
gtcatcctcgagtactcccccgaccgcaaccgcctcgacaaggtccaccaggagaccttc
ggcaagtcgggctgccgccgcatcgtccccggccagctcctcgccgtcgaccctaagggc
cgcgcgctctgcatcgccgcgctcgagaagcagaagctcgtctacgtcctcaaccgcgac
gccgccgcgcgcctcaccatctcgtccccgctcgaggcgcacaagtccaacaccctcacc
ttcgccctcgccgcgctcgactgcgggttcgacaaccccgtcttcgccgccatcgagctc
gagtacgcagagtctgaccgcgaccccacggggcaggccgccaaccaggcgcagaagctc
ctcaccttctacgagcttgacctggggctcaaccatgtctcccgcaaggtctctgagccg
attgataatggcgccaatcttctcgtgactgtccctggtggtggtgacggtccgagcggg
gttctcgtgtgctgtgacaatttcgtgctgtaccggaaccagggtcacccagagattcgt
gctgtgattccacgccgtgctgacctccctgctgagcgcggcgtcctcattgttgctgcc
gccacacacaaacaaaagagtatgttcttcttcctgctacagactgagtatggtgacatc
ttcaaggttgaccttgatcatagtggggatactgttagtgagctcaggatcaaatacttt
gacaccataccagtgacatcagctgtctgtgtgctgcgatctggtttcctctttgctgct
tctgagtttggcaaccatgcactttaccagttccgtgatattggtagagatgcggatgtc
gagtcctcttctgcaacactgatggagacagaggagggattccagccagttttctttcag
ccaagggcactgaagaacctcatgcgcatagatgagattgagagcctcatgccagtcatg
gacatgcgtgtcgcgaatttatttgacgaggaaacaccccagttgttcactgcctgtggc
cgtggtccacgctccacgctgcgcatcctgaggcctggccttgccatcagtgagatggcc
cgatcaatgctccctgccgagcctattgctgtgtggactgtcaagaagaatatcaatgac
atgtttgatgcttacattgttgtgtcctttactaatgtaacacttgtgctctctattggt
gagaccattgaagaagtcagtgacagccagttcctggacaccacgcactcccttgcagtc
gcgctccttggtgaggactctctgatgcaggtccacccaaatggcatccggcacatcagg
gaggatggtcgtgtcaatgagtggaggacacctggaaagaaaactattacaaaggttgga
tcaaaccgtctccaggtggtaatcgctcttagtggtggagagctcatctattttgagatg
gacatgactggtcagctcatggaggtggagaagcaggacatgtctggtgatgttgcgtgc
ctggccattgcgccggtccctgaggggaggcaaaggtcaagatttcttgctgtaggatcc
tatgataacaccatccgtatcctctcactggaccctgacgattgccttcagcctctaagt
ctccagagtgtatcatcggcaccggagtcacttttattcttggaggtccaggcctctatt
ggtggtgaggatggtgcagactatccagccaatcttttcctcaatgctggtttgcagaat
ggtgtacttttccggaccaacgtcgacatggttacgggtcagctatcggacacacgttct
cgattccttggcctgagacctccaaagctattcccttgtatagttagccacaggcaagca
atgctctgcctgtccagccgtccttggctgggttatatacatcaaggccattttctcttg
acaccattgtcctgtgatacgctcgaatctgcagcatcattttcttctgatcagtgctca
gaaggtgtagttgctgttgcgggagatgccctacgtattttcaccattgagcgcctgggg
gagactttcaatgagacggctatccctctacgctacaccccaaggaagtttgtgattcta
ccaaagaaaaaatatattgctgtcattgagagtgataagggtgcgttcagcgcagaagag
cgagaagctgctaagaaagagtgccttgaggcttctggtgcagcggagaatggaaatgcg
aataatggtgatccaatggagaatggtgatggtcgagaagatggtgctgagggtaacatg
tttcctgatgaacaatatggttatccaaaggctgaatctgagaggtgggtttcctgcatt
aggatccttgatccaaggagtagggacacaacctgtctgctggaattgcaggaaaatgag
gctgctgtcagtatttgcactgtgaatttccatgataaggagcatggaactctactggct
gttggcactgccaagggattgcagttctggccaaggaggacccttgctggtggattcatc
cacgtatataagtttgtggacgaagggaggtcacttgaacttctacacaagacacaagtg
gaggaagtacctcttgcgttgtgccaattccagggacgattacttgcaggtgttggttca
gtgctcagactatatgatctggggaagagaaagttgctcagaaaatgtgaaaacaagctt
tttccgaggacaatagtgtctattcatacctaccgtgataggatctatgttggtgatatg
caagagtcatttcactattgcaagtacagacgagatgaaaaccaactctatatatttgct
gatgacagtgttcccagatggcttacagcagcacaacacatagattttgacactatggct
ggagcagataagtttgggaatatatattttgctcgtcttcctcaggatctctcagatgag
attgaagaagacccaactggaggcaagattaaatgggagcaagggaagttaaatggtgcc
cctaacaaagttgacgagattgtgcagtttcatgtcggtgatgttgtaacatgtttgcag
aaagcctctttgattcctggtggaggtgaatgtcttatttatgggactgtgatgggcagt
gtgggagcactgcttgcattcacctccagggaagatgttgacttcttctctcacttggag
atgcatctccgccaggagcatccaccattatgtggaagagatcacatggcttacagatct
gcttattttccagtgaaggatgtgatagatggtgatctctgcgagcagtatccctccctc
ccagctgatatgcagaggaagattgctgatgagctggacagaactcctggtgagatcctg
aagaagctagaagacatcaggaacaaaatcatctaa
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integrated database retrieval system
