Miscanthus floridulus: 136466627
Help
Entry
136466627 CDS
T10264
Name
(RefSeq) spliceosome-associated protein 130 A-like
KO
K12830
splicing factor 3B subunit 3
Organism
mflo Miscanthus floridulus
Pathway
mflo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
136466627
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mflo03021
]
136466627
03041 Spliceosome [BR:
mflo03041
]
136466627
03036 Chromosome and associated proteins [BR:
mflo03036
]
136466627
Transcription machinery [BR:
mflo03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
136466627
Spliceosome [BR:
mflo03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
136466627
Complex B
136466627
Complex C
U2 SnRNP specific factors
136466627
Chromosome and associated proteins [BR:
mflo03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
136466627
TFTC complex
136466627
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
CPSF_A
Beta-prop_RSE1_2nd
Motif
Other DBs
NCBI-GeneID:
136466627
NCBI-ProteinID:
XP_066321195
LinkDB
All DBs
Position
7:complement(16797799..16803520)
Genome browser
AA seq
1233 aa
AA seq
DB search
MYLYSLTLQRATGAVCTVIGSFSGRDSKKSAASGSGSGSGSTQEIAVARGSTLDLLRPDP
ETGRLRTLLSVDVFGAIRSLAQFRLTGANKDYLVVGSDSGRLVILEYSPDRNRLDKVHQE
TFGKSGCRRIVPGQLLAVDPKGRALCIAALEKQKLVYVLNRDAAARLTISSPLEAHKSNT
LTFALAALDCGFDNPVFAAIELEYAESDRDPTGQAANQAQKLLTFYELDLGLNHVSRKVS
EPIDNGANLLVTVPGGGDGPSGVLVCCDNFVLYRNQGHPEIRAVIPRRADLPAERGVLIV
AAATHKQKSMFFFLLQTEYGDIFKVDLDHSGDTVSELRIKYFDTIPVTSAVCVLRSGFLF
AASEFGNHALYQFRDIGRDADVESSSATLMETEEGFQPVFFQPRALKNLMRIDEIESLMP
VMDMRVANLFDEETPQLFTACGRGPRSTLRILRPGLAISEMARSMLPAEPIAVWTVKKNI
NDMFDAYIVVSFTNVTLVLSIGETIEEVSDSQFLDTTHSLAVALLGEDSLMQVHPNGIRH
IREDGRVNEWRTPGKKTITKVGSNRLQVVIALSGGELIYFEMDMTGQLMEVEKQDMSGDV
ACLAIAPVPEGRQRSRFLAVGSYDNTIRILSLDPDDCLQPLSVQSVSSAPESLLFLEVQA
SIGGEDGADYPANLFLNAGLQNGVLFRTNVDMVTGQLSDTRSRFLGLRPPKLFPCIVSHR
QAMLCLSSRPWLGYIHQGHFLLTPLSCDTLESAASFSSDQCSEGVVAVAGDALRIFTIER
LGETFNETAIPLRYTPRKFVILPKKKYIAVIESDKGAFSAEEREAAKKECLEASGAAENG
NANNGDPMENGDGQEDGAEGNMFPDEQYGYPKAESERWVSCIRILDPRSRDTTCLLELQE
NEAAVSICTVNFHDKEHGTLLAVGTAKGLQFWPRRTLAGGFIHVYKFVDEGRSLELLHKT
QVEEVPLALCQFQGRLLAGVGSVLRLYDLGKRKLLRKCENKLFPRTIVSIHTYRDRIYVG
DMQESFHYCKYRRDENQLYIFADDSVPRWLTAAQHIDFDTMAGADKFGNIYFARLPQDLS
DEIEEDPTGGKIKWEQGKLNGAPNKVDEIVQFHVGDVVTCLQKASLIPGGGECLIYGTVM
GSVGALLAFTSREDVDFFSHLEMHLRQEHPPLCGRDHMAYRSAYFPVKDVIDGDLCEQYP
SLPADMQRKIADELDRTPGEILKKLEDIRNKII
NT seq
3702 nt
NT seq
+upstream
nt +downstream
nt
atgtacctctacagcctgacgctgcagcgcgcgacgggcgcggtgtgcaccgtcatcggc
agcttcagcgggcgggactcgaagaagtcggccgcctccgggtccgggtccggctccggc
tccacgcaggagatcgccgtggcccggggcagcacgctcgacctcctccgcccggacccg
gagacgggccgcctccgcacgctcctctccgtcgacgtcttcggcgccatccgctcgctc
gcgcagttccgcctcaccggcgccaacaaggactacctcgtcgtcggctccgactcgggc
cgcctcgtcatcctcgagtactcccccgaccgcaaccgcctcgacaaggtccaccaggag
accttcggcaagtcgggctgccgccgcatcgtccccggccagctcctcgccgtcgaccct
aagggccgcgcgctctgcatcgccgcgctcgagaagcagaagctcgtctacgtcctcaac
cgcgacgccgccgcgcgcctcaccatctcgtccccgctcgaggcgcacaagtccaacacc
ctcaccttcgccctcgccgcgctcgactgcgggttcgacaaccccgtcttcgccgccatc
gagctcgagtacgcagagtctgaccgcgaccccacggggcaggccgccaaccaggcgcag
aagctcctcaccttctacgagcttgacctggggctcaaccatgtctcccgcaaggtctct
gagccgattgataatggcgccaatcttctcgtgactgtccctggtggtggtgacggtccg
agcggggttctcgtgtgctgtgacaatttcgtgctgtaccggaaccagggtcacccagag
attcgtgctgtgattccacgccgtgctgacctccctgctgagcgcggcgtcctcattgtt
gctgccgccacacacaaacaaaagagtatgttcttcttcctgctacagactgagtatggt
gacatcttcaaggttgaccttgatcatagtggggatactgttagtgagctcaggatcaaa
tactttgacaccataccagtgacatcagctgtctgtgtgctgcgatctggtttcctcttt
gctgcttctgagtttggcaaccatgcactttaccagttccgtgatattggtagagatgcg
gatgtcgagtcctcttctgcaacactgatggagacagaggagggattccagccagttttc
tttcagccaagggcactgaagaacctcatgcgcatagatgagattgagagcctcatgcca
gtcatggacatgcgtgtcgcgaatttatttgacgaggaaacaccccagttgttcactgcc
tgtggccgtggtccacgctccacgctgcgcatcctgaggcctggccttgccatcagtgag
atggcccgatcaatgctccctgccgagcctattgctgtgtggactgtcaagaagaatatc
aatgacatgtttgatgcttacattgttgtgtcctttactaatgtaacacttgtgctctct
attggtgagaccattgaagaagtcagtgacagccagttcctggacaccacgcactccctt
gcagtcgcgctccttggtgaggactctctgatgcaggtccacccaaatggcatccggcac
atcagggaggatggtcgtgtcaatgagtggaggacacctggaaagaaaactattacaaag
gttggatcaaaccgtctccaggtggtaatcgctcttagtggtggagagctcatctatttt
gagatggacatgactggtcagctcatggaggtggagaagcaggacatgtctggtgatgtt
gcgtgcctggccattgcgccggtccctgaggggaggcaaaggtcaagatttcttgctgta
ggatcctatgataacaccatccgtatcctctcactggaccctgacgattgccttcagcct
ctaagtgtccagagtgtatcatcggcaccggagtcacttttattcttggaggtccaggcc
tctattggtggtgaggatggtgcagactatccagccaatcttttcctcaatgctggtttg
cagaatggtgtacttttccggaccaacgtcgacatggttacgggtcagctatcggacaca
cgttctcgattccttggcctgagacctccaaagctattcccttgtatagttagccacagg
caagcaatgctctgcctgtccagccgtccttggctgggttatatacatcaaggccatttt
ctcttgacaccattgtcctgtgatacgctcgaatctgcagcatcattttcttctgatcag
tgctcagaaggtgtagttgctgttgcgggagatgccctacgtattttcaccattgagcgc
ctgggggagactttcaatgagacggctatccctctacgctacaccccaaggaagtttgtg
attctaccaaagaaaaaatatattgctgtcattgagagtgataagggtgcgttcagcgca
gaagagcgagaagctgctaagaaagagtgccttgaggcttctggtgcagcggagaatgga
aatgcgaataatggtgatccaatggagaatggtgatggtcaagaagatggtgctgagggt
aacatgtttcctgatgaacaatatggttatccaaaggctgaatctgagaggtgggtttcc
tgcattaggatccttgatccaaggagtagggacacaacctgtctgctggaattgcaggaa
aatgaggctgctgtcagtatttgcactgtgaatttccatgacaaggagcatggaactcta
ctggctgttggcactgccaagggattgcagttctggccaaggaggacccttgctggtgga
ttcatccacgtatataagtttgtggacgaagggaggtcacttgaacttctacacaagaca
caagtggaggaagtacctcttgcgttgtgccaattccagggacgattacttgcaggtgtt
ggttcagtgctcagactatatgatctggggaagagaaagttgctcagaaaatgtgaaaac
aagctttttccgaggacaatagtgtctattcatacctaccgtgataggatctatgttggt
gatatgcaagagtcatttcactattgcaagtacagacgagatgaaaaccaactctatata
tttgctgatgacagtgttcccagatggcttacagcagcacaacacatagattttgacact
atggctggagcagataagtttgggaatatatattttgctcgtcttcctcaggatctctca
gatgagattgaagaagacccaactggaggcaagattaaatgggagcaagggaagttaaat
ggtgcccctaacaaagttgacgagattgtgcagtttcatgtcggtgatgttgtaacatgt
ttgcagaaagcctctttgattcctggtggaggtgaatgtcttatttatgggactgtgatg
ggcagtgtgggagcactgcttgcattcacctccagggaagatgttgacttcttctctcac
ttggagatgcatctccgccaggagcatccaccattatgtggaagagatcacatggcttac
agatctgcttattttccagtgaaggatgtgatagatggtgatctctgcgagcagtatccc
tccctcccagctgatatgcagaggaagattgctgatgagctggacagaactcctggtgag
atcctgaagaagctagaagacatcaggaacaaaatcatctaa
DBGET
integrated database retrieval system
