Miscanthus floridulus: 136466686
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Entry
136466686 CDS
T10264
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH11-like isoform X1
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
mflo Miscanthus floridulus
Pathway
mflo03018
RNA degradation
Brite
Enzymes [BR:
mflo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
136466686
Messenger RNA biogenesis [BR:
mflo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
136466686
mRNA degradation factors
3'-5' decay
Ski complex
136466686
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
136466686
NCBI-ProteinID:
XP_066321268
LinkDB
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Position
7:complement(20180008..20193206)
Genome browser
AA seq
1375 aa
AA seq
DB search
MSMDGPATSPASEVPFRISFSGHGGHLRLDPTPHTHSPIPDFVLPPAYPAESPSSVKEYL
ERNYLDPELHLPTAADSGRVWDVDWFALARPPLEPSAPRTTLAPAWVPPFRRGRQKLQSA
SESQVWDPESGQMEMVDVFDSGTGGMAPRMPGPAKDFVRGSINNRPFRPGGLQDDTAEAA
ALEKAFPEGARNGDWVRELMSGGPAQVAPPGFRKGLELGQLKEYKSHWKCFQNGELVEEQ
PAPSSNDTMEKYSVQFDDLFKIAWEEDAANKLLQEGVVEQSAEGEGINEIGEQKVDALQD
ASETITTLDAEKHEVDVIRDVPETQTDLDQMLSSEVQAASGRQPGVSGDEKPTQDGMVWA
LVGGDEDIVTNFYKLVPDMAIEFPFELDKFQKEAIYYLEKGESVFVAAHTSAGKTVVAEY
AFALATKHCTRAVYTAPIKTISNQKYRDFSGKFDVGLLTGDVSIRPEATCLIMTTEILRS
MLYKGADIIRDIEWVIFDEVHYVNDAERGVVWEEVIIMLPKHINIVLLSATVPNTVEFAD
WIGRTKQKKIRVTSTNKRPVPLEHCLFYSGEVYKICERDMFLTQGFKEAKDAFKKKNLNK
FGVKSGPKSGTPAVRAGTQGKNPDTSNKGRDQKYPKHHNSNSGAAMVQQSSSGPKRFETL
FWMPLVNNLLKKSLVPVVIFCFSKNRCDKSADSMFGADLTSSSEKSEIRVFCDKAFSRLK
GSDRNLPQVVGIQSLLRRGIGVHHAGLLPIVKEVVEMLFCRGVIKVLFSTETFAMGVNAP
ARTVVFDSLRKFDGKEHRKLLPGEYIQMAGRAGRRGLDNIGTVIIMCRDEIPEESDLKNL
IVGKPTRLESQFRLTYTMILHLLRVEELKVEDMLKRSFAEFHAQKNLPEKEKLLLQMLRQ
PTRTIECIKGEPSIEEYYEMALEAEEHREFITEAIMKLPNSQQFLTPGRLVVVKSDSDDD
HLLGVILKNPSTTLKKYVVLVLTGDCSSSVLAPEFNKNEKGPGDFQGGQFIALKGKRGMD
DEYFSSSVSSRKSSGVITIKLPYKGDASGMGFEVRAIENKEIMSICTSKIKIDQVRLLED
PNKAAYSRTVQQLIKEEPDGTKYPPALDAIKDLKMKDMDLVKSYHAYHRLLQQMSENKCH
GCIKLKEHISLMKGQKMYKDELNKLQFQVSDEALQQMPEFQGRIDVLKVIDYIDSDLVVQ
LKGRVACEMNSGEELISTECLFENQLDDLEPEEAVAIMSAFVFQQRNASEPSLTPKLAEA
KKRLYDTAIKLGKLQADFKVPVDPEEYARDNLKFALVEVVYEWAKGTPFADICELTDVSE
GIIVRTIVRLDETCREFRNAASIMGNSALFKKMEIASNAIKRDIVFAASLYVTGI
NT seq
4128 nt
NT seq
+upstream
nt +downstream
nt
atgtccatggacggccctgccacctcgccggcgagcgaggtgccgttccgcatcagcttc
tccggccacggcggccacctccgcctcgaccctaccccgcacacgcacagccccattccg
gatttcgtcctgccgccggcttacccggccgagagcccgagcagcgtgaaggagtacctc
gagaggaactacctcgaccccgagctgcacctccccactgcggccgatagcgggagggtg
tgggatgtcgattggttcgccctggccaggccgccgttggagccctctgccccccgcacc
acgctcgcgcccgcctgggtaccgcctttccggcgcggccggcagaagctgcagtccgcg
tcggagtcacaagtgtgggatcctgagtccgggcaaatggagatggtcgacgtgttcgat
tcagggaccggggggatggcgcctcggatgcctggtccggcgaaggacttcgtcaggggg
agcatcaacaacagaccttttcgtccgggcggtctgcaggatgacacagctgaggcggct
gccctggagaaggcgttcccagagggtgcacggaatggtgattgggtgcgtgagctcatg
agtggtggcccggcgcaggttgctcctccagggttccgtaagggattggagctgggtcag
ttgaaggagtataaaagccactggaagtgtttccagaatggagaacttgtagaggagcaa
cctgcaccatcatcgaatgacacaatggaaaagtactctgtgcagtttgatgatcttttc
aagatagcgtgggaggaagatgctgccaacaagttgttgcaggagggtgttgttgaacaa
tctgctgaaggtgaaggaatcaatgaaattggcgaacaaaaagttgatgcattgcaggat
gcttccgagactataacaacgctagatgctgagaaacatgaagttgatgtcataagggat
gttcctgaaactcaaacagacttggatcaaatgttatcttccgaagtacaggctgcttca
ggcagacaaccaggtgtatcaggtgatgagaagccaacacaggatggcatggtttgggca
cttgttggtggggatgaagacatagtgactaacttctacaaactcgttccagatatggca
atcgagtttccatttgaattggataagttccagaaggaggctatatattatctcgagaag
ggtgaatcagtctttgttgcagcccatacttcggcgggaaagacagttgttgctgagtat
gcattcgcattagcaacaaaacattgcactagggctgtctatactgctcctattaaaact
atcagcaaccagaaatacagagatttttctgggaagtttgatgtgggacttctgacagga
gatgttagcatcaggccagaggcaacttgcttaattatgactactgaaatattgcgttca
atgctctacaaaggtgcagacattatacgtgatattgaatgggtaatcttcgatgaagtg
cattatgtaaatgatgctgaaagaggtgtagtctgggaggaggttattataatgctcccg
aagcacattaacattgttcttctttcggcaacggtcccaaatactgttgaatttgctgac
tggattggtcggacaaagcagaagaaaattcgtgtcacgtcgaccaacaaaaggcctgtt
ccgcttgagcattgcttgttctactctggagaagtgtacaaaatatgtgagagggacatg
tttcttactcaaggatttaaagaagcaaaagatgctttcaaaaagaaaaatttgaataag
tttggagtgaaatctggtccaaagtcaggaacccctgcagtacgtgctggaactcaaggc
aaaaatccagatacatccaacaaggggagagatcagaagtacccaaagcaccacaattcc
aattcaggagcagccatggttcaacaaagctcctcagggccaaagagatttgaaacctta
ttttggatgccacttgtgaataaccttctgaagaaatcccttgtgcctgtggtgattttt
tgtttctcaaagaaccgctgtgataaatcggcagatagtatgtttggcgctgatctcacc
agtagttcggagaaaagtgaaatacgtgtcttctgtgacaaggcgttttcacgtcttaaa
ggatctgataggaaccttccacaggttgtaggaatacaaagccttctgcgaagaggaatc
ggagtacaccatgctggacttctccctattgtgaaggaagttgttgagatgctattctgt
cgtggtgtaatcaaggtactgttttccactgagacatttgcaatgggtgttaatgcacca
gcaagaacggttgtgtttgattctttaagaaagtttgatggaaaagaacaccgaaaattg
cttccaggggagtatattcaaatggctgggcgagctggtcggagaggacttgataacatt
ggtactgtgatcattatgtgtcgtgatgaaattcctgaagaaagcgatttgaaaaatctg
atcgttggaaaaccaactcgtttggaatctcaatttcgattaacatacactatgatatta
catcttctgcgtgtggaggaactgaaggtcgaggacatgctcaagagaagttttgccgaa
ttccatgctcaaaagaatttgcctgagaaagaaaagctacttctgcaaatgcttcgtcaa
cctacaaggacaatagagtgcataaaaggagagccttctattgaggaatactatgagatg
gctttagaagctgaggaacatagggaatttataacagaagcaattatgaagctgcctaat
tctcaacagtttcttacgcctgggagattggtggttgttaaatctgattctgatgatgat
cacttgcttggtgttatactgaaaaatccatctacaacgctaaagaaatacgttgttctg
gtattgaccggtgattgcagttcatctgtactagcccctgagttcaataaaaatgaaaag
ggacctggggattttcaaggaggacaatttattgccctgaaaggaaaacgtggcatggac
gatgaatatttctcttcttctgttagttcacgaaaaagttcaggtgtaataactatcaag
ctaccatacaagggggatgcatctggaatgggctttgaagtaagagcaattgagaataaa
gaaatcatgagtatatgcaccagcaaaataaagatcgatcaagtcagactccttgaggat
cctaacaaagctgcatactctagaactgtccaacagcttataaaggaggaaccagatgga
actaagtatcctcctgctttagatgcaataaaagatctaaaaatgaaagacatggatctt
gttaaaagctaccatgcataccacagactactgcaacaaatgtctgaaaacaagtgccat
ggttgtataaaactgaaggagcatatatcattgatgaaggggcaaaagatgtacaaggat
gagttgaataaattgcaattccaagtgtcagacgaggcacttcaacagatgccggagttt
caaggcagaattgatgtactaaaggtaatcgactacattgattctgatctagttgtgcaa
cttaagggtcgagtagcatgtgaaatgaactccggtgaggagttaatatcaacagaatgt
ctgtttgaaaatcaactggatgacctagaacctgaagaagctgtggctattatgtctgca
ttcgtcttccaacagcggaatgcttcagaaccatctcttactccaaaactggctgaagcc
aaaaagaggctttatgatacagcaatcaaattaggaaagctccaagcagatttcaaggtg
cccgtggaccctgaagagtatgcacgtgataatctcaagtttgcccttgttgaggttgtc
tacgagtgggcaaaggggacgcctttcgcagacatatgtgagctgactgatgtatctgaa
gggatcattgtaagaacaatcgtccgtctggacgaaacatgcagggaattcaggaatgca
gcttccatcatggggaactctgcgctgttcaagaagatggagatcgcttctaatgctatt
aagcgtgatattgtgtttgcagcaagcttgtatgtcacaggaatctga
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