Miscanthus floridulus: 136466874
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Entry
136466874 CDS
T10264
Name
(RefSeq) protein CLP1 homolog
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
mflo Miscanthus floridulus
Pathway
mflo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
136466874
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mflo03019
]
136466874
Enzymes [BR:
mflo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
136466874
Messenger RNA biogenesis [BR:
mflo03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
136466874
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
nSTAND3
ATP_bind_1
AAA_22
ABC_tran
CbiA
SRPRB
AAA_10
AAA_29
AAA_24
MMR_HSR1
GTP_EFTU
Motif
Other DBs
NCBI-GeneID:
136466874
NCBI-ProteinID:
XP_066321486
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All DBs
Position
7:35735994..35748229
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AA seq
440 aa
AA seq
DB search
MAAATTAGAGAATPQPPRQYKLAPQSELRVEVLPDAPLRVRLVTGTAEIFGTEMPPEGWV
PVPPRSKIAVFTWHGATVELDGVSESEYTSDETPMVIYVNTHAILDARRARARAAAAQGG
DMEASQGPRVIVVGPTDSGKSTLCKMLLSWAAKLGWKPTYVDLDIGQGSITIPGCISASP
IEKPIDIVDGIPLEMPLVYFYGHPNPSINADVYKVLMKELAKTLEKQFSGNAESRAAGMV
INTMGWVEGLGYELLLNAIETFKANVVLVLGQEKLWKMLKDAVQSKSNIDVVKLHKSEGV
VLRNSKYRQKTRSFRIREYFYGIANDLAPHSNIVNFSDVSVYKIGGGHQAPRSALPIGAE
PVADPTRLVAVNISTDMIHTVLAVSYAKEPDEIISSNIAGFIHVTDVDIQRKKLTYIAPC
PGDLPSRLLIASSLTWLLEE
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
atggccgccgcgacaaccgcgggggccggagccgcgaccccgcagccgccacggcagtac
aagctagctccgcagagcgagctgcgtgtggaggtgctccccgacgcgcccctccgagtg
cgcctcgtcaccggcacggcggagatcttcggcaccgaaatgcccccggagggctgggtc
cccgtccctccccgatccaagatcgccgttttcacctggcacggcgcgacagtggaactg
gacggggtgagcgagagcgagtacacgtctgacgagactccaatggtaatttatgtcaac
acgcacgccattctggatgcccgtagggcaagggcgagggctgctgcagctcaggggggc
gatatggaagcctcacagggacctagagtgattgttgtggggccaacagattccggaaaa
agtactctctgcaagatgctccttagctgggctgccaaactgggctggaagcctacttat
gtcgatttagatattggccaggggtctataacaatccctggatgtatttctgcctcacca
attgagaaacctatagatatagttgatgggattcccttggagatgccactggtatacttc
tatggccacccaaatccaagtattaatgcggatgtttacaaagttcttatgaaggagcta
gctaaaacattggagaaacagttctctggcaatgctgagtctagggcagcaggaatggtt
atcaatacaatggggtgggttgaaggccttgggtatgagttacttctcaatgcaattgaa
accttcaaggccaatgtagtactggtactgggacaggagaaactctggaaaatgttaaaa
gatgcagttcaaagcaagtccaacattgatgttgtaaaacttcataaatcagagggtgtt
gtcctcagaaattcaaaatatcggcaaaaaacgagaagcttccgaatcagggaatacttt
tatgggattgcaaatgatcttgcaccgcactcaaacattgtgaatttcagtgatgtctcg
gtgtacaaaatcggtggtggccatcaagctccccgttcagcattacctatcggtgcagag
cctgtggcagatcccactcgacttgttgctgtcaacatcagcacggatatgatccataca
gtgcttgccgtttcctatgctaaggaacctgatgaaataatttctagcaatattgccgga
ttcattcatgttactgatgttgacatccaaaggaagaagctgacgtacattgctccttgc
ccgggggacttaccaagcaggctgttgatcgcgagttcactaacatggttacttgaggaa
taa
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